Gene name: BER1
Reference locus (S288C): YLR412W
Gene biotype: protein_coding
Description: SRR1-like protein BER1; Protein involved in microtubule-related processes; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene
Top 10 interactors (score): YKE2 (0.718); BEM3 (0.67); RRD1 (0.658); RRP8 (0.647); BEM2 (0.574); SLA1 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:891921-892745:+ | gene-YLR412W_AKU4011 | rna-NM_001182300.1_AKU4011 | cds-NP_013516.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:124084-124908:+ | gene-YLR412W_BG1 | rna-NM_001182300.1_BG1 | cds-NP_013516.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:930226-931050:+ | gene-YLR412W_Bruggeman | rna-NM_001182300.1_Bruggeman | cds-NP_013516.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:925770-926594:+ | gene-YLR412W_CAT1 | rna-NM_001182300.1_CAT1 | cds-NP_013516.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:927516-928340:+ | gene-YLR412W_CBS1585 | rna-NM_001182300.1_CBS1585 | cds-NP_013516.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:911174-911998:+ | gene-YLR412W_CBS436 | rna-NM_001182300.1_CBS436 | cds-NP_013516.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:963558-964382:+ | gene-YLR412W_CBS6412 | rna-NM_001182300.1_CBS6412 | cds-NP_013516.1_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:927808-928632:+ | gene-YLR412W_CBS6413 | rna-NM_001182300.1_CBS6413 | cds-NP_013516.1_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:927215-928039:+ | gene-YLR412W_CENPK1137D | rna-NM_001182300.1_CENPK1137D | cds-NP_013516.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:884464-885288:+ | gene-YLR412W_EthanolRed | rna-NM_001182300.1_EthanolRed | cds-NP_013516.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:913774-914598:+ | gene-YLR412W_FaliES1 | rna-NM_001182300.1_FaliES1 | cds-NP_013516.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:66914-67738:+ | gene-YLR412W_JAY291 | rna-NM_001182300.1_JAY291 | cds-NP_013516.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:929092-929916:+ | gene-YLR412W_MUCL30387 | rna-NM_001182300.1_MUCL30387 | cds-NP_013516.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:935190-936014:+ | gene-YLR412W_MUCL30388 | rna-NM_001182300.1_MUCL30388 | cds-NP_013516.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:928736-929560:+ | gene-YLR412W_MUCL39482 | rna-NM_001182300.1_MUCL39482 | cds-NP_013516.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:923392-924216:+ | gene-YLR412W_MUCL42920 | rna-NM_001182300.1_MUCL42920 | cds-NP_013516.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:948342-949166:+ | gene-YLR412W_NCIM3186 | rna-NM_001182300.1_NCIM3186 | cds-NP_013516.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:937917-938741:+ | gene-YLR412W_NCYC1407 | rna-NM_001182300.1_NCYC1407 | cds-NP_013516.1_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:924295-925119:+ | gene-YLR412W_PE2H3 | rna-NM_001182300.1_PE2H3 | cds-NP_013516.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:924039-924863:+ | gene-YLR412W_PE2H4 | rna-NM_001182300.1_PE2H4 | cds-NP_013516.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:948368-949192:+ | gene-YLR412W_S288C | rna-NM_001182300.1_S288C | cds-NP_013516.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:105480-106304:- | gene-YLR412W_SA1 | rna-NM_001182300.1_SA1 | cds-NP_013516.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:916853-917677:+ | gene-YLR412W_ThermosaccDry | rna-NM_001182300.1_ThermosaccDry | cds-NP_013516.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:929385-930209:+ | gene-YLR412W_VR1 | rna-NM_001182300.1_VR1 | cds-NP_013516.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:253570-254394:+ | gene-YLR412W_ZTW1 | rna-NM_001182300.1_ZTW1 | cds-NP_013516.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:902386-903210:+ | gene-YLR412W_Sparadoxus | rna-NM_001182300.1_Sparadoxus | cds-NP_013516.1_Sparadoxus | 88.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |