Gene name: BEM3
Reference locus (S288C): YPL115C
Gene biotype: protein_coding
Description: GTPase-activating protein BEM3; Rho GTPase activating protein (RhoGAP); involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly
Top 10 interactors (score): CDC42 (0.998); BEM1 (0.936); CDC24 (0.931); BNI1 (0.916); CLA4 (0.915); RDI1 (0.881); LRG1 (0.831); RHO1 (0.816); RSR1 (0.786); STE20 (0.765); EPO1 (0.761); BUD5 (0.756); SPA2 (0.743); SEC4 (0.74); LSB1 (0.739); KSS1 (0.73); RHO4 (0.728); ACT1 (0.72); BOI2 (0.718); GIC2 (0.716)
Homologues (species, bitscore): ARHGAP24 (Homo sapiens, 88.6); Arhgap24 (Mus musculus, 87.4); arhgap24 (Danio rerio, 90.1); arhgap21 (Xenopus tropicalis, 88.6); RhoGAP1A (Drosophila melanogaster, 80.1); pac-1 (Caenorhabditis elegans, 68.9); AT1G08340 (Arabidopsis thaliana, 60.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:309739-313125:- | gene-YPL115C_AKU4011 | rna-NM_001183929.1_AKU4011 | cds-NP_015210.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:515496-518882:- | gene-YPL115C_BG1 | rna-NM_001183929.1_BG1 | cds-NP_015210.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:335745-339131:- | gene-YPL115C_Bruggeman | rna-NM_001183929.1_Bruggeman | cds-NP_015210.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:332412-335798:- | gene-YPL115C_CAT1 | rna-NM_001183929.1_CAT1 | cds-NP_015210.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:313812-317198:- | gene-YPL115C_CBS1585 | rna-NM_001183929.1_CBS1585 | cds-NP_015210.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:328488-331874:- | gene-YPL115C_CBS436 | rna-NM_001183929.1_CBS436 | cds-NP_015210.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:318481-321867:- | gene-YPL115C_CBS6412 | rna-NM_001183929.1_CBS6412 | cds-NP_015210.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:310448-313834:- | gene-YPL115C_CBS6413 | rna-NM_001183929.1_CBS6413 | cds-NP_015210.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:332049-335435:- | gene-YPL115C_CENPK1137D | rna-NM_001183929.1_CENPK1137D | cds-NP_015210.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:308429-311815:- | gene-YPL115C_EthanolRed | rna-NM_001183929.1_EthanolRed | cds-NP_015210.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:316021-319407:- | gene-YPL115C_FaliES1 | rna-NM_001183929.1_FaliES1 | cds-NP_015210.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:46409-49795:+ | gene-YPL115C_JAY291 | rna-NM_001183929.1_JAY291 | cds-NP_015210.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:326984-330370:- | gene-YPL115C_MUCL30387 | rna-NM_001183929.1_MUCL30387 | cds-NP_015210.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:325255-328641:- | gene-YPL115C_MUCL30388 | rna-NM_001183929.1_MUCL30388 | cds-NP_015210.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:307141-310527:- | gene-YPL115C_MUCL39482 | rna-NM_001183929.1_MUCL39482 | cds-NP_015210.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:364384-367770:- | gene-YPL115C_MUCL42920 | rna-NM_001183929.1_MUCL42920 | cds-NP_015210.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:332083-335469:- | gene-YPL115C_NCIM3186 | rna-NM_001183929.1_NCIM3186 | cds-NP_015210.1_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:313594-316980:- | gene-YPL115C_NCYC1407 | rna-NM_001183929.1_NCYC1407 | cds-NP_015210.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:321087-324473:- | gene-YPL115C_PE2H3 | rna-NM_001183929.1_PE2H3 | cds-NP_015210.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:320710-324096:- | gene-YPL115C_PE2H4 | rna-NM_001183929.1_PE2H4 | cds-NP_015210.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:332100-335486:- | gene-YPL115C_S288C | rna-NM_001183929.1_S288C | cds-NP_015210.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:38195-41581:+ | gene-YPL115C_SA1 | rna-NM_001183929.1_SA1 | cds-NP_015210.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:315819-319205:- | gene-YPL115C_ThermosaccDry | rna-NM_001183929.1_ThermosaccDry | cds-NP_015210.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:330799-334185:- | gene-YPL115C_VR1 | rna-NM_001183929.1_VR1 | cds-NP_015210.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:315144-318530:- | gene-YPL115C_ZTW1 | rna-NM_001183929.1_ZTW1 | cds-NP_015210.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:316859-320239:- | gene-YPL115C_Sparadoxus | rna-NM_001183929.1_Sparadoxus | cds-NP_015210.1_Sparadoxus | 89.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |