Gene name: BDP1
Reference locus (S288C): YNL039W
Gene biotype: protein_coding
Description: Transcription factor tfiiib component b''; Essential subunit of RNA polymerase III transcription factor (TFIIIB); TFIIIB is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs
Top 10 interactors (score): TFC1 (0.999); SPT15 (0.999); BRF1 (0.999); TFC4 (0.999); RPO31 (0.995); TFC8 (0.995); TFC3 (0.993); RPC34 (0.993); RET1 (0.992); RPC37 (0.991); RPC17 (0.986); RPC82 (0.985); TFC6 (0.98); RPC53 (0.978); RPC19 (0.974); RPC25 (0.969); RPC40 (0.955); RPC31 (0.952); RPC10 (0.949); RPB8 (0.939)
Homologues (species, bitscore): BDP1 (Homo sapiens, 82.4); Bdp1 (Mus musculus, 81.6); LOC553495 (Danio rerio, 84.0); CG9305 (Drosophila melanogaster, 71.6); B0261.1 (Caenorhabditis elegans, 58.9); AT4G39160 (Arabidopsis thaliana, 53.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:542506-544290:+ | gene-YNL039W_AKU4011 | rna-NM_001182878.3_AKU4011 | cds-NP_014359.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:446456-448240:+ | gene-YNL039W_BG1 | rna-NM_001182878.3_BG1 | cds-NP_014359.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:560659-562443:+ | gene-YNL039W_Bruggeman | rna-NM_001182878.3_Bruggeman | cds-NP_014359.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:596188-597972:+ | gene-YNL039W_CAT1 | rna-NM_001182878.3_CAT1 | cds-NP_014359.3_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:543176-544960:+ | gene-YNL039W_CBS1585 | rna-NM_001182878.3_CBS1585 | cds-NP_014359.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:611416-613200:+ | gene-YNL039W_CBS436 | rna-NM_001182878.3_CBS436 | cds-NP_014359.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:538269-540053:+ | gene-YNL039W_CBS6412 | rna-NM_001182878.3_CBS6412 | cds-NP_014359.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:539587-541371:+ | gene-YNL039W_CBS6413 | rna-NM_001182878.3_CBS6413 | cds-NP_014359.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:548634-550418:+ | gene-YNL039W_CENPK1137D | rna-NM_001182878.3_CENPK1137D | cds-NP_014359.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:545319-547103:+ | gene-YNL039W_EthanolRed | rna-NM_001182878.3_EthanolRed | cds-NP_014359.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:536102-537886:+ | gene-YNL039W_FaliES1 | rna-NM_001182878.3_FaliES1 | cds-NP_014359.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:50888-52672:+ | gene-YNL039W_JAY291 | rna-NM_001182878.3_JAY291 | cds-NP_014359.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:556873-558657:+ | gene-YNL039W_MUCL30387 | rna-NM_001182878.3_MUCL30387 | cds-NP_014359.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:585632-587416:+ | gene-YNL039W_MUCL30388 | rna-NM_001182878.3_MUCL30388 | cds-NP_014359.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:540593-542377:+ | gene-YNL039W_MUCL39482 | rna-NM_001182878.3_MUCL39482 | cds-NP_014359.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:544658-546442:+ | gene-YNL039W_MUCL42920 | rna-NM_001182878.3_MUCL42920 | cds-NP_014359.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:555017-556801:+ | gene-YNL039W_NCIM3186 | rna-NM_001182878.3_NCIM3186 | cds-NP_014359.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:542644-544428:+ | gene-YNL039W_NCYC1407 | rna-NM_001182878.3_NCYC1407 | cds-NP_014359.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:545805-547589:+ | gene-YNL039W_PE2H3 | rna-NM_001182878.3_PE2H3 | cds-NP_014359.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:540881-542665:+ | gene-YNL039W_PE2H4 | rna-NM_001182878.3_PE2H4 | cds-NP_014359.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:555048-556832:+ | gene-YNL039W_S288C | rna-NM_001182878.3_S288C | cds-NP_014359.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:133730-135514:+ | gene-YNL039W_SA1 | rna-NM_001182878.3_SA1 | cds-NP_014359.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:536728-538512:+ | gene-YNL039W_ThermosaccDry | rna-NM_001182878.3_ThermosaccDry | cds-NP_014359.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:555766-557550:+ | gene-YNL039W_VR1 | rna-NM_001182878.3_VR1 | cds-NP_014359.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:446048-447832:+ | gene-YNL039W_ZTW1 | rna-NM_001182878.3_ZTW1 | cds-NP_014359.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:551694-553478:+ | gene-YNL039W_Sparadoxus | rna-NM_001182878.3_Sparadoxus | cds-NP_014359.3_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |