Gene name: BDF2
Reference locus (S288C): YDL070W
Gene biotype: protein_coding
Description: Bromodomain-containing factor 2; Protein involved in transcription initiation; acts at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p; protein abundance increases in response to DNA replication stress; BDF2 has a paralog, BDF1, that arose from the whole genome duplication
Top 10 interactors (score): TAF7 (0.95); TAF1 (0.947); BDF1 (0.926); HHF1 (0.892); DBP9 (0.854); DBP10 (0.854); INO80 (0.835); HTZ1 (0.822); SWR1 (0.778); SPT15 (0.739); DHR2 (0.717); BUD23 (0.705); SPT16 (0.697); DRS1 (0.694); TSR1 (0.682); HCA4 (0.678); HST1 (0.673); DBP3 (0.669); DBP7 (0.669); HHF2 (0.665)
Homologues (species, bitscore): BRDT (Homo sapiens, 161.8); Brdt (Mus musculus, 170.2); brdt (Danio rerio, 165.2); brd2 (Xenopus tropicalis, 154.5); fs(1)h (Drosophila melanogaster, 105.5); bet-1 (Caenorhabditis elegans, 139.4); NPX1 (Arabidopsis thaliana, 97.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:315628-317544:+ | gene-YDL070W_AKU4011 | rna-NM_001180129.1_AKU4011 | cds-NP_010213.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:232513-234429:- | gene-YDL070W_BG1 | rna-NM_001180129.1_BG1 | cds-NP_010213.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:333412-335328:+ | gene-YDL070W_Bruggeman | rna-NM_001180129.1_Bruggeman | cds-NP_010213.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:329779-331695:+ | gene-YDL070W_CAT1 | rna-NM_001180129.1_CAT1 | cds-NP_010213.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:313881-315797:+ | gene-YDL070W_CBS1585 | rna-NM_001180129.1_CBS1585 | cds-NP_010213.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:330574-332490:+ | gene-YDL070W_CBS436 | rna-NM_001180129.1_CBS436 | cds-NP_010213.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:311969-313885:+ | gene-YDL070W_CBS6412 | rna-NM_001180129.1_CBS6412 | cds-NP_010213.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:331960-333876:+ | gene-YDL070W_CBS6413 | rna-NM_001180129.1_CBS6413 | cds-NP_010213.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:329847-331763:+ | gene-YDL070W_CENPK1137D | rna-NM_001180129.1_CENPK1137D | cds-NP_010213.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:326431-328347:+ | gene-YDL070W_EthanolRed | rna-NM_001180129.1_EthanolRed | cds-NP_010213.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:332678-334594:+ | gene-YDL070W_FaliES1 | rna-NM_001180129.1_FaliES1 | cds-NP_010213.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:102689-104605:+ | gene-YDL070W_JAY291 | rna-NM_001180129.1_JAY291 | cds-NP_010213.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:330803-332719:+ | gene-YDL070W_MUCL30387 | rna-NM_001180129.1_MUCL30387 | cds-NP_010213.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:321928-323844:+ | gene-YDL070W_MUCL30388 | rna-NM_001180129.1_MUCL30388 | cds-NP_010213.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:314985-316901:+ | gene-YDL070W_MUCL39482 | rna-NM_001180129.1_MUCL39482 | cds-NP_010213.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:236998-238914:+ | gene-YDL070W_MUCL42920 | rna-NM_001180129.1_MUCL42920 | cds-NP_010213.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:330947-332863:+ | gene-YDL070W_NCIM3186 | rna-NM_001180129.1_NCIM3186 | cds-NP_010213.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:315009-316925:+ | gene-YDL070W_NCYC1407 | rna-NM_001180129.1_NCYC1407 | cds-NP_010213.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:321807-323723:+ | gene-YDL070W_PE2H3 | rna-NM_001180129.1_PE2H3 | cds-NP_010213.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:321806-323722:+ | gene-YDL070W_PE2H4 | rna-NM_001180129.1_PE2H4 | cds-NP_010213.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:331024-332940:+ | gene-YDL070W_S288C | rna-NM_001180129.1_S288C | cds-NP_010213.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:101993-103909:- | gene-YDL070W_SA1 | rna-NM_001180129.1_SA1 | cds-NP_010213.1_SA1 | 99.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:332130-334046:+ | gene-YDL070W_ThermosaccDry | rna-NM_001180129.1_ThermosaccDry | cds-NP_010213.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:334207-336610:+ | gene-YDL070W_VR1 | rna-NM_001180129.1_VR1 | cds-NP_010213.1_VR1 | 79.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:330068-331984:+ | gene-YDL070W_ZTW1 | rna-NM_001180129.1_ZTW1 | cds-NP_010213.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:332192-334102:+ | gene-YDL070W_Sparadoxus | rna-NM_001180129.1_Sparadoxus | cds-NP_010213.1_Sparadoxus | 91.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |