Gene name: BDF1
Reference locus (S288C): YLR399C
Gene biotype: protein_coding
Description: Bromodomain-containing factor 1; Protein involved in transcription initiation; functions at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf2p; BDF1 has a paralog, BDF2, that arose from the whole genome duplication
Top 10 interactors (score): SWR1 (0.998); YAF9 (0.998); SWC4 (0.997); VPS72 (0.996); SWC7 (0.994); RVB1 (0.992); RVB2 (0.992); SWC5 (0.991); ACT1 (0.99); VPS71 (0.989); HTZ1 (0.982); HHF1 (0.981); ARP4 (0.971); TAF7 (0.968); SWC3 (0.956); IES1 (0.954); ARP6 (0.953); NHP10 (0.952); INO80 (0.948); TAF14 (0.947)
Homologues (species, bitscore): BRDT (Homo sapiens, 175.6); Brdt (Mus musculus, 183.7); brdt (Danio rerio, 181.4); brd3 (Xenopus tropicalis, 163.3); fs(1)h (Drosophila melanogaster, 119.0); bet-1 (Caenorhabditis elegans, 157.5); AT1G17790 (Arabidopsis thaliana, 112.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:869070-871130:- | gene-YLR399C_AKU4011 | rna-NM_001182287.1_AKU4011 | cds-NP_013503.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:101214-103274:- | gene-YLR399C_BG1 | rna-NM_001182287.1_BG1 | cds-NP_013503.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:907375-909435:- | gene-YLR399C_Bruggeman | rna-NM_001182287.1_Bruggeman | cds-NP_013503.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:902900-904960:- | gene-YLR399C_CAT1 | rna-NM_001182287.1_CAT1 | cds-NP_013503.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:904666-906726:- | gene-YLR399C_CBS1585 | rna-NM_001182287.1_CBS1585 | cds-NP_013503.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:888305-890365:- | gene-YLR399C_CBS436 | rna-NM_001182287.1_CBS436 | cds-NP_013503.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:940707-942767:- | gene-YLR399C_CBS6412 | rna-NM_001182287.1_CBS6412 | cds-NP_013503.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:904957-907017:- | gene-YLR399C_CBS6413 | rna-NM_001182287.1_CBS6413 | cds-NP_013503.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:904347-906407:- | gene-YLR399C_CENPK1137D | rna-NM_001182287.1_CENPK1137D | cds-NP_013503.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:861613-863673:- | gene-YLR399C_EthanolRed | rna-NM_001182287.1_EthanolRed | cds-NP_013503.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:890923-892983:- | gene-YLR399C_FaliES1 | rna-NM_001182287.1_FaliES1 | cds-NP_013503.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:44083-46143:- | gene-YLR399C_JAY291 | rna-NM_001182287.1_JAY291 | cds-NP_013503.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:906241-908301:- | gene-YLR399C_MUCL30387 | rna-NM_001182287.1_MUCL30387 | cds-NP_013503.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:912327-914387:- | gene-YLR399C_MUCL30388 | rna-NM_001182287.1_MUCL30388 | cds-NP_013503.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:905886-907946:- | gene-YLR399C_MUCL39482 | rna-NM_001182287.1_MUCL39482 | cds-NP_013503.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:900542-902602:- | gene-YLR399C_MUCL42920 | rna-NM_001182287.1_MUCL42920 | cds-NP_013503.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:919510-921570:- | gene-YLR399C_NCIM3186 | rna-NM_001182287.1_NCIM3186 | cds-NP_013503.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:915066-917126:- | gene-YLR399C_NCYC1407 | rna-NM_001182287.1_NCYC1407 | cds-NP_013503.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:901464-903524:- | gene-YLR399C_PE2H3 | rna-NM_001182287.1_PE2H3 | cds-NP_013503.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:901208-903268:- | gene-YLR399C_PE2H4 | rna-NM_001182287.1_PE2H4 | cds-NP_013503.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:919536-921596:- | gene-YLR399C_S288C | rna-NM_001182287.1_S288C | cds-NP_013503.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:127092-129152:+ | gene-YLR399C_SA1 | rna-NM_001182287.1_SA1 | cds-NP_013503.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:894002-896062:- | gene-YLR399C_ThermosaccDry | rna-NM_001182287.1_ThermosaccDry | cds-NP_013503.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:906554-908614:- | gene-YLR399C_VR1 | rna-NM_001182287.1_VR1 | cds-NP_013503.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:230720-232780:- | gene-YLR399C_ZTW1 | rna-NM_001182287.1_ZTW1 | cds-NP_013503.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:879428-881503:- | gene-YLR399C_Sparadoxus | rna-NM_001182287.1_Sparadoxus | cds-NP_013503.1_Sparadoxus | 89.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |