Gene name: BCD1
Reference locus (S288C): YHR040W
Gene biotype: protein_coding
Description: Box C/D snoRNA protein 1; Essential protein required for the accumulation of box C/D snoRNA
Top 10 interactors (score): NOP58 (0.963); RVB2 (0.933); RVB1 (0.923); MAK16 (0.899); RSA1 (0.898); YCR087C-A (0.898); PIH1 (0.893); SNU13 (0.88); BCP1 (0.867); RTT106 (0.847); TAH1 (0.843); KRI1 (0.835); NAF1 (0.826); SRP40 (0.813); RRP8 (0.805); VPS71 (0.798); UTP23 (0.787); LCP5 (0.749); PUF6 (0.743); NOP56 (0.738)
Homologues (species, bitscore): ZNHIT6 (Homo sapiens, 71.2); Znhit6 (Mus musculus, 59.7); ZNHIT6 (Danio rerio, 50.4); CG1463 (Drosophila melanogaster, 70.5); zhit-3 (Caenorhabditis elegans, 62.0); AT1G04945 (Arabidopsis thaliana, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:176187-177293:+ | gene-YHR040W_AKU4011 | rna-NM_001179170.1_AKU4011 | cds-NP_011906.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:96401-97501:+ | gene-YHR040W_BG1 | rna-NM_001179170.1_BG1 | cds-NP_011906.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:183628-184728:+ | gene-YHR040W_Bruggeman | rna-NM_001179170.1_Bruggeman | cds-NP_011906.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:178015-179115:+ | gene-YHR040W_CAT1 | rna-NM_001179170.1_CAT1 | cds-NP_011906.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:176562-177662:+ | gene-YHR040W_CBS1585 | rna-NM_001179170.1_CBS1585 | cds-NP_011906.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:170799-171899:+ | gene-YHR040W_CBS436 | rna-NM_001179170.1_CBS436 | cds-NP_011906.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:175528-176628:+ | gene-YHR040W_CBS6412 | rna-NM_001179170.1_CBS6412 | cds-NP_011906.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:176365-177465:+ | gene-YHR040W_CBS6413 | rna-NM_001179170.1_CBS6413 | cds-NP_011906.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:181187-182287:+ | gene-YHR040W_CENPK1137D | rna-NM_001179170.1_CENPK1137D | cds-NP_011906.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:175691-176791:+ | gene-YHR040W_EthanolRed | rna-NM_001179170.1_EthanolRed | cds-NP_011906.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:176668-177768:+ | gene-YHR040W_FaliES1 | rna-NM_001179170.1_FaliES1 | cds-NP_011906.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:3861-4961:- | gene-YHR040W_JAY291 | rna-NM_001179170.1_JAY291 | cds-NP_011906.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:182699-183799:+ | gene-YHR040W_MUCL30387 | rna-NM_001179170.1_MUCL30387 | cds-NP_011906.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:183169-184269:+ | gene-YHR040W_MUCL30388 | rna-NM_001179170.1_MUCL30388 | cds-NP_011906.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:175586-176686:+ | gene-YHR040W_MUCL39482 | rna-NM_001179170.1_MUCL39482 | cds-NP_011906.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:182258-183358:+ | gene-YHR040W_MUCL42920 | rna-NM_001179170.1_MUCL42920 | cds-NP_011906.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:187806-188906:+ | gene-YHR040W_NCIM3186 | rna-NM_001179170.1_NCIM3186 | cds-NP_011906.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:175460-176560:+ | gene-YHR040W_NCYC1407 | rna-NM_001179170.1_NCYC1407 | cds-NP_011906.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:177795-178895:+ | gene-YHR040W_PE2H3 | rna-NM_001179170.1_PE2H3 | cds-NP_011906.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:185242-186342:+ | gene-YHR040W_PE2H4 | rna-NM_001179170.1_PE2H4 | cds-NP_011906.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:187924-189024:+ | gene-YHR040W_S288C | rna-NM_001179170.1_S288C | cds-NP_011906.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:169550-170650:- | gene-YHR040W_SA1 | rna-NM_001179170.1_SA1 | cds-NP_011906.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:177759-178859:+ | gene-YHR040W_ThermosaccDry | rna-NM_001179170.1_ThermosaccDry | cds-NP_011906.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:184293-185393:+ | gene-YHR040W_VR1 | rna-NM_001179170.1_VR1 | cds-NP_011906.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:169306-170406:+ | gene-YHR040W_ZTW1 | rna-NM_001179170.1_ZTW1 | cds-NP_011906.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:175381-176487:+ | gene-YHR040W_Sparadoxus | rna-NM_001179170.1_Sparadoxus | cds-NP_011906.1_Sparadoxus | 88.2 | 99.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |