Gene name: AVT6
Reference locus (S288C): YER119C
Gene biotype: protein_coding
Description: Vacuolar amino acid transporter 6; Vacuolar aspartate and glutamate exporter; member of a family of seven genes (AVT1-7) related to vesicular GABA-glycine transporters; involved in compartmentalizing acidic amino acids in response to nitrogen starvation; AVT6 has a paralog, AVT5, that arose from the whole genome duplication
Top 10 interactors (score): AVT3 (0.941); AVT4 (0.937); AVT1 (0.896); VBA1 (0.79); VBA3 (0.775); YHC3 (0.747); VBA2 (0.729); ATG22 (0.715); THI72 (0.67); VBA5 (0.618); ERS1 (0.598); TMS1 (0.561); ARO80 (0.526); ARO2 (0.525); GAL3 (0.469); GAL1 (0.469); ARO4 (0.468); TRP5 (0.465); LST7 (0.465); YPQ1 (0.451)
Homologues (species, bitscore): SLC38A7 (Homo sapiens, 104.4); Slc38a7 (Mus musculus, 108.6); slc38a7 (Danio rerio, 113.6); slc38a7 (Xenopus tropicalis, 94.7); CG30394 (Drosophila melanogaster, 85.9); Y51F10.4 (Caenorhabditis elegans, 64.7); AT1G80510 (Arabidopsis thaliana, 98.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:393373-394719:- | gene-YER119C_AKU4011 | rna-NM_001179009.1_AKU4011 | cds-NP_011044.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:30901-32247:+ | gene-YER119C_BG1 | rna-NM_001179009.1_BG1 | cds-NP_011044.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:403844-405190:- | gene-YER119C_Bruggeman | rna-NM_001179009.1_Bruggeman | cds-NP_011044.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:399085-400431:- | gene-YER119C_CAT1 | rna-NM_001179009.1_CAT1 | cds-NP_011044.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:392768-394114:- | gene-YER119C_CBS1585 | rna-NM_001179009.1_CBS1585 | cds-NP_011044.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:395474-396820:- | gene-YER119C_CBS436 | rna-NM_001179009.1_CBS436 | cds-NP_011044.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:391846-393192:- | gene-YER119C_CBS6412 | rna-NM_001179009.1_CBS6412 | cds-NP_011044.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:398690-400036:- | gene-YER119C_CBS6413 | rna-NM_001179009.1_CBS6413 | cds-NP_011044.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:397233-398579:- | gene-YER119C_CENPK1137D | rna-NM_001179009.1_CENPK1137D | cds-NP_011044.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:393222-394568:- | gene-YER119C_EthanolRed | rna-NM_001179009.1_EthanolRed | cds-NP_011044.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:393703-395049:- | gene-YER119C_FaliES1 | rna-NM_001179009.1_FaliES1 | cds-NP_011044.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:1922-3268:- | gene-YER119C_JAY291 | rna-NM_001179009.1_JAY291 | cds-NP_011044.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:400792-402138:- | gene-YER119C_MUCL30387 | rna-NM_001179009.1_MUCL30387 | cds-NP_011044.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:395738-397084:- | gene-YER119C_MUCL30388 | rna-NM_001179009.1_MUCL30388 | cds-NP_011044.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:391793-393139:- | gene-YER119C_MUCL39482 | rna-NM_001179009.1_MUCL39482 | cds-NP_011044.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:400284-401630:- | gene-YER119C_MUCL42920 | rna-NM_001179009.1_MUCL42920 | cds-NP_011044.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:399495-400841:- | gene-YER119C_NCIM3186 | rna-NM_001179009.1_NCIM3186 | cds-NP_011044.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:397326-398672:- | gene-YER119C_NCYC1407 | rna-NM_001179009.1_NCYC1407 | cds-NP_011044.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:407871-409217:- | gene-YER119C_PE2H3 | rna-NM_001179009.1_PE2H3 | cds-NP_011044.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:397812-399158:- | gene-YER119C_PE2H4 | rna-NM_001179009.1_PE2H4 | cds-NP_011044.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:399496-400842:- | gene-YER119C_S288C | rna-NM_001179009.1_S288C | cds-NP_011044.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:109103-110449:- | gene-YER119C_SA1 | rna-NM_001179009.1_SA1 | cds-NP_011044.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:394501-395847:- | gene-YER119C_ThermosaccDry | rna-NM_001179009.1_ThermosaccDry | cds-NP_011044.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:395555-396901:- | gene-YER119C_VR1 | rna-NM_001179009.1_VR1 | cds-NP_011044.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:391610-392956:- | gene-YER119C_ZTW1 | rna-NM_001179009.1_ZTW1 | cds-NP_011044.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:395561-396907:- | gene-YER119C_Sparadoxus | rna-NM_001179009.1_Sparadoxus | cds-NP_011044.1_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |