Gene name: AVT2
Reference locus (S288C): YEL064C
Gene biotype: protein_coding
Description: Vacuolar amino acid transporter 2; Putative transporter; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters
Top 10 interactors (score): OXP1 (0.76); NPR2 (0.697); CAN1 (0.596); YEL068C (0.591); AVT1 (0.574); APC2 (0.569); MBR1 (0.568); ALP1 (0.529); RMD6 (0.506); SPE4 (0.501); ADE3 (0.485); LST7 (0.465); TRP5 (0.465); FOL1 (0.463); RPC11 (0.46); UIP5 (0.453); YIL067C (0.453); ADE8 (0.45); IMD4 (0.415)
Homologues (species, bitscore): SLC38A11 (Homo sapiens, 171.8); Slc38a11 (Mus musculus, 191.4); Slc38a11 (Danio rerio, 204.5); slc38a11 (Xenopus tropicalis, 162.5); CG13743 (Drosophila melanogaster, 192.6); Y51F10.4 (Caenorhabditis elegans, 65.5); AT1G80510 (Arabidopsis thaliana, 120.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:24199-25641:- | gene-YEL064C_AKU4011 | rna-NM_001178879.1_AKU4011 | cds-NP_010850.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:54863-56305:+ | gene-YEL064C_BG1 | rna-NM_001178879.1_BG1 | cds-NP_010850.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:27714-29156:- | gene-YEL064C_Bruggeman | rna-NM_001178879.1_Bruggeman | cds-NP_010850.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:26154-27596:- | gene-YEL064C_CAT1 | rna-NM_001178879.1_CAT1 | cds-NP_010850.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:24150-25592:- | gene-YEL064C_CBS1585 | rna-NM_001178879.1_CBS1585 | cds-NP_010850.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:25202-26644:- | gene-YEL064C_CBS436 | rna-NM_001178879.1_CBS436 | cds-NP_010850.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:24389-25831:- | gene-YEL064C_CBS6412 | rna-NM_001178879.1_CBS6412 | cds-NP_010850.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:29046-30488:- | gene-YEL064C_CBS6413 | rna-NM_001178879.1_CBS6413 | cds-NP_010850.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:27643-29085:- | gene-YEL064C_CENPK1137D | rna-NM_001178879.1_CENPK1137D | cds-NP_010850.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:23965-25407:- | gene-YEL064C_EthanolRed | rna-NM_001178879.1_EthanolRed | cds-NP_010850.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:24228-25670:- | gene-YEL064C_FaliES1 | rna-NM_001178879.1_FaliES1 | cds-NP_010850.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000427.1:32404-33846:+ | gene-YEL064C_JAY291 | rna-NM_001178879.1_JAY291 | cds-NP_010850.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:28155-29597:- | gene-YEL064C_MUCL30387 | rna-NM_001178879.1_MUCL30387 | cds-NP_010850.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:24268-25710:- | gene-YEL064C_MUCL30388 | rna-NM_001178879.1_MUCL30388 | cds-NP_010850.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:23517-24959:- | gene-YEL064C_MUCL39482 | rna-NM_001178879.1_MUCL39482 | cds-NP_010850.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:28147-29589:- | gene-YEL064C_MUCL42920 | rna-NM_001178879.1_MUCL42920 | cds-NP_010850.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:29796-31238:- | gene-YEL064C_NCIM3186 | rna-NM_001178879.1_NCIM3186 | cds-NP_010850.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:28615-30057:- | gene-YEL064C_NCYC1407 | rna-NM_001178879.1_NCYC1407 | cds-NP_010850.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:32607-34049:- | gene-YEL064C_PE2H3 | rna-NM_001178879.1_PE2H3 | cds-NP_010850.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:28540-29982:- | gene-YEL064C_PE2H4 | rna-NM_001178879.1_PE2H4 | cds-NP_010850.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:29797-31239:- | gene-YEL064C_S288C | rna-NM_001178879.1_S288C | cds-NP_010850.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:55667-57109:+ | gene-YEL064C_SA1 | rna-NM_001178879.1_SA1 | cds-NP_010850.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:24628-26070:- | gene-YEL064C_ThermosaccDry | rna-NM_001178879.1_ThermosaccDry | cds-NP_010850.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:23835-25277:- | gene-YEL064C_VR1 | rna-NM_001178879.1_VR1 | cds-NP_010850.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:23562-25004:- | gene-YEL064C_ZTW1 | rna-NM_001178879.1_ZTW1 | cds-NP_010850.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:27976-29427:- | gene-YEL064C_Sparadoxus | rna-NM_001178879.1_Sparadoxus | cds-NP_010850.1_Sparadoxus | 87.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |