Gene name: AVT1
Reference locus (S288C): YJR001W
Gene biotype: protein_coding
Description: Vacuolar transporter; imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters
Top 10 interactors (score): AVT6 (0.896); AVT7 (0.89); VBA1 (0.853); VBA3 (0.729); YPQ1 (0.703); ATG22 (0.699); AVT5 (0.698); VBA2 (0.685); ERS1 (0.67); VPS9 (0.647); RTC2 (0.621); YOR034C-A (0.619); YBL029W (0.619); YHC3 (0.599); GLT1 (0.588); AVT2 (0.574); AVT3 (0.574); YGR161W-C (0.573); YIL014C-A (0.572); DSC3 (0.571)
Homologues (species, bitscore): SLC32A1 (Homo sapiens, 68.6); Slc32a1 (Mus musculus, 67.4); slc32a1 (Danio rerio, 63.9); slc32a1 (Xenopus tropicalis, 67.8); VGAT (Drosophila melanogaster, 73.2); unc-47 (Caenorhabditis elegans, 82.8); AT5G02170 (Arabidopsis thaliana, 180.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:419971-421779:+ | gene-YJR001W_AKU4011 | rna-NM_001181658.1_AKU4011 | cds-NP_012534.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:190948-192756:- | gene-YJR001W_BG1 | rna-NM_001181658.1_BG1 | cds-NP_012534.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:434068-435876:+ | gene-YJR001W_Bruggeman | rna-NM_001181658.1_Bruggeman | cds-NP_012534.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:438009-439817:+ | gene-YJR001W_CAT1 | rna-NM_001181658.1_CAT1 | cds-NP_012534.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:431556-433364:+ | gene-YJR001W_CBS1585 | rna-NM_001181658.1_CBS1585 | cds-NP_012534.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:450536-452344:+ | gene-YJR001W_CBS436 | rna-NM_001181658.1_CBS436 | cds-NP_012534.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:419785-421593:+ | gene-YJR001W_CBS6412 | rna-NM_001181658.1_CBS6412 | cds-NP_012534.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:422012-423820:+ | gene-YJR001W_CBS6413 | rna-NM_001181658.1_CBS6413 | cds-NP_012534.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:419227-421035:+ | gene-YJR001W_CENPK1137D | rna-NM_001181658.1_CENPK1137D | cds-NP_012534.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:424943-426751:+ | gene-YJR001W_EthanolRed | rna-NM_001181658.1_EthanolRed | cds-NP_012534.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:436084-437892:+ | gene-YJR001W_FaliES1 | rna-NM_001181658.1_FaliES1 | cds-NP_012534.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000321.1:15348-17156:- | gene-YJR001W_JAY291 | rna-NM_001181658.1_JAY291 | cds-NP_012534.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:434395-436203:+ | gene-YJR001W_MUCL30387 | rna-NM_001181658.1_MUCL30387 | cds-NP_012534.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:430918-432726:+ | gene-YJR001W_MUCL30388 | rna-NM_001181658.1_MUCL30388 | cds-NP_012534.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:424890-426698:+ | gene-YJR001W_MUCL39482 | rna-NM_001181658.1_MUCL39482 | cds-NP_012534.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:430330-432138:+ | gene-YJR001W_MUCL42920 | rna-NM_001181658.1_MUCL42920 | cds-NP_012534.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:436781-438589:+ | gene-YJR001W_NCIM3186 | rna-NM_001181658.1_NCIM3186 | cds-NP_012534.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:422784-424592:+ | gene-YJR001W_NCYC1407 | rna-NM_001181658.1_NCYC1407 | cds-NP_012534.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:441193-443001:+ | gene-YJR001W_PE2H3 | rna-NM_001181658.1_PE2H3 | cds-NP_012534.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:434887-436695:+ | gene-YJR001W_PE2H4 | rna-NM_001181658.1_PE2H4 | cds-NP_012534.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:436802-438610:+ | gene-YJR001W_S288C | rna-NM_001181658.1_S288C | cds-NP_012534.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:232811-234619:+ | gene-YJR001W_SA1 | rna-NM_001181658.1_SA1 | cds-NP_012534.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:429743-431551:+ | gene-YJR001W_ThermosaccDry | rna-NM_001181658.1_ThermosaccDry | cds-NP_012534.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:432112-433920:+ | gene-YJR001W_VR1 | rna-NM_001181658.1_VR1 | cds-NP_012534.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:409746-411554:+ | gene-YJR001W_ZTW1 | rna-NM_001181658.1_ZTW1 | cds-NP_012534.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:434601-436409:+ | gene-YJR001W_Sparadoxus | rna-NM_001181658.1_Sparadoxus | cds-NP_012534.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |