AVL9 (YLR114C)


Gene profile

Gene name: AVL9
Reference locus (S288C): YLR114C
Gene biotype: protein_coding

Description: Late secretory pathway protein AVL9; Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress

Top 10 interactors (score): DTD1 (0.962); NOP53 (0.962); UBX3 (0.962); ANR2 (0.878); GTR2 (0.842); PYC2 (0.841); PYC1 (0.841); APL2 (0.836); PRP22 (0.835); SGF29 (0.819); YHL017W (0.773); MON1 (0.723); AFI1 (0.712); MON2 (0.709); RIC1 (0.691); YHR045W (0.671); FAA2 (0.651); UBX2 (0.641); VPS1 (0.619); CDC42 (0.612)

Homologues (species, bitscore): AVL9 (Homo sapiens, 167.5); Avl9 (Mus musculus, 168.3); avl9 (Danio rerio, 145.6); avl9 (Xenopus tropicalis, 159.1); DmelCG11178 (Drosophila melanogaster, 172.9); T26A5.6 (Caenorhabditis elegans, 176.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:357420-359720:- gene-YLR114C_AKU4011 rna-NM_001182001.1_AKU4011 cds-NP_013215.1_AKU4011 97.9 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000212.1:321205-323499:- gene-YLR114C_BG1 rna-NM_001182001.1_BG1 cds-NP_013215.1_BG1 99.9 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:368549-370849:- gene-YLR114C_Bruggeman rna-NM_001182001.1_Bruggeman cds-NP_013215.1_Bruggeman 98.1 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:368474-370762:- gene-YLR114C_CAT1 rna-NM_001182001.1_CAT1 cds-NP_013215.1_CAT1 98.0 99.4 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:364563-366863:- gene-YLR114C_CBS1585 rna-NM_001182001.1_CBS1585 cds-NP_013215.1_CBS1585 97.9 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:354810-357104:- gene-YLR114C_CBS436 rna-NM_001182001.1_CBS436 cds-NP_013215.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:362981-365281:- gene-YLR114C_CBS6412 rna-NM_001182001.1_CBS6412 cds-NP_013215.1_CBS6412 97.9 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:364828-367128:- gene-YLR114C_CBS6413 rna-NM_001182001.1_CBS6413 cds-NP_013215.1_CBS6413 97.9 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:359966-362260:- gene-YLR114C_CENPK1137D rna-NM_001182001.1_CENPK1137D cds-NP_013215.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:357620-359920:- gene-YLR114C_EthanolRed rna-NM_001182001.1_EthanolRed cds-NP_013215.1_EthanolRed 97.9 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:357131-359431:- gene-YLR114C_FaliES1 rna-NM_001182001.1_FaliES1 cds-NP_013215.1_FaliES1 97.9 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000117.1:33763-36057:+ gene-YLR114C_JAY291 rna-NM_001182001.1_JAY291 cds-NP_013215.1_JAY291 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:364836-367136:- gene-YLR114C_MUCL30387 rna-NM_001182001.1_MUCL30387 cds-NP_013215.1_MUCL30387 98.0 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:373618-375918:- gene-YLR114C_MUCL30388 rna-NM_001182001.1_MUCL30388 cds-NP_013215.1_MUCL30388 97.9 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:365072-367372:- gene-YLR114C_MUCL39482 rna-NM_001182001.1_MUCL39482 cds-NP_013215.1_MUCL39482 97.9 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:365198-367498:- gene-YLR114C_MUCL42920 rna-NM_001182001.1_MUCL42920 cds-NP_013215.1_MUCL42920 98.0 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:374918-377212:- gene-YLR114C_NCIM3186 rna-NM_001182001.1_NCIM3186 cds-NP_013215.1_NCIM3186 98.9 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:357345-359645:- gene-YLR114C_NCYC1407 rna-NM_001182001.1_NCYC1407 cds-NP_013215.1_NCYC1407 97.9 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:362915-365209:- gene-YLR114C_PE2H3 rna-NM_001182001.1_PE2H3 cds-NP_013215.1_PE2H3 99.9 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:362656-364950:- gene-YLR114C_PE2H4 rna-NM_001182001.1_PE2H4 cds-NP_013215.1_PE2H4 99.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:374944-377238:- gene-YLR114C_S288C rna-NM_001182001.1_S288C cds-NP_013215.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000055.1:824-3112:- gene-YLR114C_SA1 rna-NM_001182001.1_SA1 cds-NP_013215.1_SA1 97.8 99.4 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:358341-360641:- gene-YLR114C_ThermosaccDry rna-NM_001182001.1_ThermosaccDry cds-NP_013215.1_ThermosaccDry 97.8 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:370810-373104:- gene-YLR114C_VR1 rna-NM_001182001.1_VR1 cds-NP_013215.1_VR1 99.9 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:356124-358439:- gene-YLR114C_ZTW1 rna-NM_001182001.1_ZTW1 cds-NP_013215.1_ZTW1 96.8 99.7 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:365973-368266:- gene-YLR114C_Sparadoxus rna-NM_001182001.1_Sparadoxus cds-NP_013215.1_Sparadoxus 87.7 99.5 Unannotated 1 1 0 False False False True False

Additional files