Gene name: AVL9
Reference locus (S288C): YLR114C
Gene biotype: protein_coding
Description: Late secretory pathway protein AVL9; Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress
Top 10 interactors (score): DTD1 (0.962); NOP53 (0.962); UBX3 (0.962); ANR2 (0.878); GTR2 (0.842); PYC2 (0.841); PYC1 (0.841); APL2 (0.836); PRP22 (0.835); SGF29 (0.819); YHL017W (0.773); MON1 (0.723); AFI1 (0.712); MON2 (0.709); RIC1 (0.691); YHR045W (0.671); FAA2 (0.651); UBX2 (0.641); VPS1 (0.619); CDC42 (0.612)
Homologues (species, bitscore): AVL9 (Homo sapiens, 167.5); Avl9 (Mus musculus, 168.3); avl9 (Danio rerio, 145.6); avl9 (Xenopus tropicalis, 159.1); DmelCG11178 (Drosophila melanogaster, 172.9); T26A5.6 (Caenorhabditis elegans, 176.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:357420-359720:- | gene-YLR114C_AKU4011 | rna-NM_001182001.1_AKU4011 | cds-NP_013215.1_AKU4011 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:321205-323499:- | gene-YLR114C_BG1 | rna-NM_001182001.1_BG1 | cds-NP_013215.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:368549-370849:- | gene-YLR114C_Bruggeman | rna-NM_001182001.1_Bruggeman | cds-NP_013215.1_Bruggeman | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:368474-370762:- | gene-YLR114C_CAT1 | rna-NM_001182001.1_CAT1 | cds-NP_013215.1_CAT1 | 98.0 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:364563-366863:- | gene-YLR114C_CBS1585 | rna-NM_001182001.1_CBS1585 | cds-NP_013215.1_CBS1585 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:354810-357104:- | gene-YLR114C_CBS436 | rna-NM_001182001.1_CBS436 | cds-NP_013215.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:362981-365281:- | gene-YLR114C_CBS6412 | rna-NM_001182001.1_CBS6412 | cds-NP_013215.1_CBS6412 | 97.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:364828-367128:- | gene-YLR114C_CBS6413 | rna-NM_001182001.1_CBS6413 | cds-NP_013215.1_CBS6413 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:359966-362260:- | gene-YLR114C_CENPK1137D | rna-NM_001182001.1_CENPK1137D | cds-NP_013215.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:357620-359920:- | gene-YLR114C_EthanolRed | rna-NM_001182001.1_EthanolRed | cds-NP_013215.1_EthanolRed | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:357131-359431:- | gene-YLR114C_FaliES1 | rna-NM_001182001.1_FaliES1 | cds-NP_013215.1_FaliES1 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000117.1:33763-36057:+ | gene-YLR114C_JAY291 | rna-NM_001182001.1_JAY291 | cds-NP_013215.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:364836-367136:- | gene-YLR114C_MUCL30387 | rna-NM_001182001.1_MUCL30387 | cds-NP_013215.1_MUCL30387 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:373618-375918:- | gene-YLR114C_MUCL30388 | rna-NM_001182001.1_MUCL30388 | cds-NP_013215.1_MUCL30388 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:365072-367372:- | gene-YLR114C_MUCL39482 | rna-NM_001182001.1_MUCL39482 | cds-NP_013215.1_MUCL39482 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:365198-367498:- | gene-YLR114C_MUCL42920 | rna-NM_001182001.1_MUCL42920 | cds-NP_013215.1_MUCL42920 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:374918-377212:- | gene-YLR114C_NCIM3186 | rna-NM_001182001.1_NCIM3186 | cds-NP_013215.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:357345-359645:- | gene-YLR114C_NCYC1407 | rna-NM_001182001.1_NCYC1407 | cds-NP_013215.1_NCYC1407 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:362915-365209:- | gene-YLR114C_PE2H3 | rna-NM_001182001.1_PE2H3 | cds-NP_013215.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:362656-364950:- | gene-YLR114C_PE2H4 | rna-NM_001182001.1_PE2H4 | cds-NP_013215.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:374944-377238:- | gene-YLR114C_S288C | rna-NM_001182001.1_S288C | cds-NP_013215.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:824-3112:- | gene-YLR114C_SA1 | rna-NM_001182001.1_SA1 | cds-NP_013215.1_SA1 | 97.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:358341-360641:- | gene-YLR114C_ThermosaccDry | rna-NM_001182001.1_ThermosaccDry | cds-NP_013215.1_ThermosaccDry | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:370810-373104:- | gene-YLR114C_VR1 | rna-NM_001182001.1_VR1 | cds-NP_013215.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:356124-358439:- | gene-YLR114C_ZTW1 | rna-NM_001182001.1_ZTW1 | cds-NP_013215.1_ZTW1 | 96.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:365973-368266:- | gene-YLR114C_Sparadoxus | rna-NM_001182001.1_Sparadoxus | cds-NP_013215.1_Sparadoxus | 87.7 | 99.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |