Gene name: ATX2
Reference locus (S288C): YOR079C
Gene biotype: protein_coding
Description: Solute carrier family 39 (zinc transporter), member 9; Metal homeostasis factor ATX2; Golgi membrane protein involved in manganese homeostasis; overproduction suppresses the sod1 (copper, zinc superoxide dismutase) null mutation
Top 10 interactors (score): YKE4 (0.959); ZRT3 (0.934); MSC2 (0.923); COT1 (0.833); ZRT1 (0.827); ATX1 (0.81); ZRC1 (0.802); BSD2 (0.788); ZRG17 (0.787); TKL1 (0.782); ISU1 (0.78); PAU8 (0.711); ZRT2 (0.71); MMT1 (0.709); GDT1 (0.688); CCC1 (0.672); MFM1 (0.654); MMT2 (0.651); SMF1 (0.62); MRS2 (0.619)
Homologues (species, bitscore): SLC39A9 (Homo sapiens, 63.9); Slc39a9 (Mus musculus, 63.5); slc39a9 (Danio rerio, 61.6); zip9 (Xenopus tropicalis, 70.9); Zip102B (Drosophila melanogaster, 67.0); T01D3.5 (Caenorhabditis elegans, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:457824-458765:- | gene-YOR079C_AKU4011 | rna-NM_001183498.1_AKU4011 | cds-NP_014722.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:120930-121871:+ | gene-YOR079C_BG1 | rna-NM_001183498.1_BG1 | cds-NP_014722.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:460542-461483:- | gene-YOR079C_Bruggeman | rna-NM_001183498.1_Bruggeman | cds-NP_014722.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:459309-460250:- | gene-YOR079C_CAT1 | rna-NM_001183498.1_CAT1 | cds-NP_014722.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:452543-453484:- | gene-YOR079C_CBS1585 | rna-NM_001183498.1_CBS1585 | cds-NP_014722.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:457342-458283:- | gene-YOR079C_CBS436 | rna-NM_001183498.1_CBS436 | cds-NP_014722.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:451833-452774:- | gene-YOR079C_CBS6412 | rna-NM_001183498.1_CBS6412 | cds-NP_014722.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:459150-460091:- | gene-YOR079C_CBS6413 | rna-NM_001183498.1_CBS6413 | cds-NP_014722.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:473472-474413:- | gene-YOR079C_CENPK1137D | rna-NM_001183498.1_CENPK1137D | cds-NP_014722.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:454535-455476:- | gene-YOR079C_EthanolRed | rna-NM_001183498.1_EthanolRed | cds-NP_014722.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:457864-458805:- | gene-YOR079C_FaliES1 | rna-NM_001183498.1_FaliES1 | cds-NP_014722.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000231.1:13181-14122:+ | gene-YOR079C_JAY291 | rna-NM_001183498.1_JAY291 | cds-NP_014722.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:465325-466266:- | gene-YOR079C_MUCL30387 | rna-NM_001183498.1_MUCL30387 | cds-NP_014722.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:469982-470923:- | gene-YOR079C_MUCL30388 | rna-NM_001183498.1_MUCL30388 | cds-NP_014722.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:460258-461199:- | gene-YOR079C_MUCL39482 | rna-NM_001183498.1_MUCL39482 | cds-NP_014722.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:475803-476744:- | gene-YOR079C_MUCL42920 | rna-NM_001183498.1_MUCL42920 | cds-NP_014722.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:473364-474305:- | gene-YOR079C_NCIM3186 | rna-NM_001183498.1_NCIM3186 | cds-NP_014722.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:466930-467871:- | gene-YOR079C_NCYC1407 | rna-NM_001183498.1_NCYC1407 | cds-NP_014722.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:465578-466519:- | gene-YOR079C_PE2H3 | rna-NM_001183498.1_PE2H3 | cds-NP_014722.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:475954-476895:- | gene-YOR079C_PE2H4 | rna-NM_001183498.1_PE2H4 | cds-NP_014722.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:473475-474416:- | gene-YOR079C_S288C | rna-NM_001183498.1_S288C | cds-NP_014722.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000091.1:13210-14151:+ | gene-YOR079C_SA1 | rna-NM_001183498.1_SA1 | cds-NP_014722.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:457020-457961:- | gene-YOR079C_ThermosaccDry | rna-NM_001183498.1_ThermosaccDry | cds-NP_014722.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:458518-459459:- | gene-YOR079C_VR1 | rna-NM_001183498.1_VR1 | cds-NP_014722.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:191017-191958:- | gene-YOR079C_ZTW1 | rna-NM_001183498.1_ZTW1 | cds-NP_014722.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:462651-463592:- | gene-YOR079C_Sparadoxus | rna-NM_001183498.1_Sparadoxus | cds-NP_014722.1_Sparadoxus | 89.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |