Gene name: ATS1
Reference locus (S288C): YAL020C
Gene biotype: protein_coding
Description: Protein required for modification of wobble nucleosides in tRNA; acts with Elongator complex, Kti11p, and Kti12p; has a potential role in regulatory interactions between microtubules and the cell cycle; forms a stable heterodimer with Kti11p
Top 10 interactors (score): KTI11 (0.999); ELP3 (0.884); SRP1 (0.881); NCS2 (0.856); GSP2 (0.851); GSP1 (0.851); DPH1 (0.843); UBA4 (0.838); KTI12 (0.831); NCS6 (0.831); ABP140 (0.819); MCM5 (0.816); RNA1 (0.788); DPH2 (0.776); YGR269W (0.771); HRR25 (0.755); ELP2 (0.751); TRM9 (0.75); DPH5 (0.748); TRM112 (0.747)
Homologues (species, bitscore): SERGEF (Homo sapiens, 72.0); Sergef (Mus musculus, 72.8); sergef (Danio rerio, 89.0); herc6 (Xenopus tropicalis, 59.7); CG7420 (Drosophila melanogaster, 82.0); herc-1 (Caenorhabditis elegans, 55.1); AT1G27060 (Arabidopsis thaliana, 59.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:98727-99728:- | gene-YAL020C_AKU4011 | rna-NM_001178165.2_AKU4011 | cds-NP_009382.2_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:85675-86676:- | gene-YAL020C_BG1 | rna-NM_001178165.2_BG1 | cds-NP_009382.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:113598-114599:- | gene-YAL020C_Bruggeman | rna-NM_001178165.2_Bruggeman | cds-NP_009382.2_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:99935-100936:- | gene-YAL020C_CAT1 | rna-NM_001178165.2_CAT1 | cds-NP_009382.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:111746-112747:- | gene-YAL020C_CBS1585 | rna-NM_001178165.2_CBS1585 | cds-NP_009382.2_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:112015-113016:- | gene-YAL020C_CBS436 | rna-NM_001178165.2_CBS436 | cds-NP_009382.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:724833-725834:- | gene-YAL020C_CBS6412 | rna-NM_001178165.2_CBS6412 | cds-NP_009382.2_CBS6412 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:110009-111010:- | gene-YAL020C_CBS6413 | rna-NM_001178165.2_CBS6413 | cds-NP_009382.2_CBS6413 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:113772-114773:- | gene-YAL020C_CENPK1137D | rna-NM_001178165.2_CENPK1137D | cds-NP_009382.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:100148-101149:- | gene-YAL020C_EthanolRed | rna-NM_001178165.2_EthanolRed | cds-NP_009382.2_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:114772-115773:- | gene-YAL020C_FaliES1 | rna-NM_001178165.2_FaliES1 | cds-NP_009382.2_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:86043-87044:- | gene-YAL020C_JAY291 | rna-NM_001178165.2_JAY291 | cds-NP_009382.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:114725-115726:- | gene-YAL020C_MUCL30387 | rna-NM_001178165.2_MUCL30387 | cds-NP_009382.2_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:111247-112248:- | gene-YAL020C_MUCL30388 | rna-NM_001178165.2_MUCL30388 | cds-NP_009382.2_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:110528-111529:- | gene-YAL020C_MUCL39482 | rna-NM_001178165.2_MUCL39482 | cds-NP_009382.2_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:112907-113908:- | gene-YAL020C_MUCL42920 | rna-NM_001178165.2_MUCL42920 | cds-NP_009382.2_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:113491-114492:- | gene-YAL020C_NCIM3186 | rna-NM_001178165.2_NCIM3186 | cds-NP_009382.2_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:98417-99418:- | gene-YAL020C_NCYC1407 | rna-NM_001178165.2_NCYC1407 | cds-NP_009382.2_NCYC1407 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:100331-101332:- | gene-YAL020C_PE2H3 | rna-NM_001178165.2_PE2H3 | cds-NP_009382.2_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:100050-101051:- | gene-YAL020C_PE2H4 | rna-NM_001178165.2_PE2H4 | cds-NP_009382.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:113614-114615:- | gene-YAL020C_S288C | rna-NM_001178165.2_S288C | cds-NP_009382.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:30483-31484:- | gene-YAL020C_SA1 | rna-NM_001178165.2_SA1 | cds-NP_009382.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:114285-115286:- | gene-YAL020C_ThermosaccDry | rna-NM_001178165.2_ThermosaccDry | cds-NP_009382.2_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:115575-116576:- | gene-YAL020C_VR1 | rna-NM_001178165.2_VR1 | cds-NP_009382.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:86096-87097:- | gene-YAL020C_ZTW1 | rna-NM_001178165.2_ZTW1 | cds-NP_009382.2_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:103659-104660:- | gene-YAL020C_Sparadoxus | rna-NM_001178165.2_Sparadoxus | cds-NP_009382.2_Sparadoxus | 85.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |