Gene name: ATP4
Reference locus (S288C): YPL078C
Gene biotype: protein_coding
Description: Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase; ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; contributes to the oligomerization of the complex, which in turn determines the shape of inner membrane cristae; phosphorylated; Belongs to the eukaryotic ATPase B chain family
Top 10 interactors (score): ATP17 (0.999); ATP2 (0.999); ATP16 (0.999); ATP8 (0.999); ATP18 (0.999); ATP20 (0.999); ATP14 (0.999); ATP3 (0.999); QCR7 (0.999); ATP7 (0.999); ATP1 (0.999); CYT1 (0.999); ATP5 (0.999); ATP6 (0.999); OLI1 (0.999); QCR2 (0.999); ATP15 (0.999); RIP1 (0.998); QCR6 (0.998); COX6 (0.998)
Homologues (species, bitscore): ATP5F1 (Homo sapiens, 55.1); ATPsynB (Drosophila melanogaster, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:385733-386467:- | gene-YPL078C_AKU4011 | rna-NM_001183892.1_AKU4011 | cds-NP_015247.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:591412-592146:- | gene-YPL078C_BG1 | rna-NM_001183892.1_BG1 | cds-NP_015247.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:462059-462793:- | gene-YPL078C_Bruggeman | rna-NM_001183892.1_Bruggeman | cds-NP_015247.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:502420-503154:- | gene-YPL078C_CAT1 | rna-NM_001183892.1_CAT1 | cds-NP_015247.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:389806-390540:- | gene-YPL078C_CBS1585 | rna-NM_001183892.1_CBS1585 | cds-NP_015247.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:404363-405097:- | gene-YPL078C_CBS436 | rna-NM_001183892.1_CBS436 | cds-NP_015247.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:393995-394729:- | gene-YPL078C_CBS6412 | rna-NM_001183892.1_CBS6412 | cds-NP_015247.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:386358-387092:- | gene-YPL078C_CBS6413 | rna-NM_001183892.1_CBS6413 | cds-NP_015247.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:407979-408713:- | gene-YPL078C_CENPK1137D | rna-NM_001183892.1_CENPK1137D | cds-NP_015247.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:384100-384834:- | gene-YPL078C_EthanolRed | rna-NM_001183892.1_EthanolRed | cds-NP_015247.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:391930-392664:- | gene-YPL078C_FaliES1 | rna-NM_001183892.1_FaliES1 | cds-NP_015247.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:531-1265:- | gene-YPL078C_JAY291 | rna-NM_001183892.1_JAY291 | cds-NP_015247.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:402890-403624:- | gene-YPL078C_MUCL30387 | rna-NM_001183892.1_MUCL30387 | cds-NP_015247.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:401689-402423:- | gene-YPL078C_MUCL30388 | rna-NM_001183892.1_MUCL30388 | cds-NP_015247.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:383135-383869:- | gene-YPL078C_MUCL39482 | rna-NM_001183892.1_MUCL39482 | cds-NP_015247.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:440997-441731:- | gene-YPL078C_MUCL42920 | rna-NM_001183892.1_MUCL42920 | cds-NP_015247.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:407993-408727:- | gene-YPL078C_NCIM3186 | rna-NM_001183892.1_NCIM3186 | cds-NP_015247.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:389742-390476:- | gene-YPL078C_NCYC1407 | rna-NM_001183892.1_NCYC1407 | cds-NP_015247.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:397023-397757:- | gene-YPL078C_PE2H3 | rna-NM_001183892.1_PE2H3 | cds-NP_015247.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:396646-397380:- | gene-YPL078C_PE2H4 | rna-NM_001183892.1_PE2H4 | cds-NP_015247.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:408010-408744:- | gene-YPL078C_S288C | rna-NM_001183892.1_S288C | cds-NP_015247.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:30121-30855:- | gene-YPL078C_SA1 | rna-NM_001183892.1_SA1 | cds-NP_015247.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:391730-392464:- | gene-YPL078C_ThermosaccDry | rna-NM_001183892.1_ThermosaccDry | cds-NP_015247.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:406732-407466:- | gene-YPL078C_VR1 | rna-NM_001183892.1_VR1 | cds-NP_015247.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:391040-391774:- | gene-YPL078C_ZTW1 | rna-NM_001183892.1_ZTW1 | cds-NP_015247.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:392703-393437:- | gene-YPL078C_Sparadoxus | rna-NM_001183892.1_Sparadoxus | cds-NP_015247.1_Sparadoxus | 92.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |