Gene name: ATP16
Reference locus (S288C): YDL004W
Gene biotype: protein_coding
Description: Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated
Top 10 interactors (score): ATP4 (0.999); ATP2 (0.999); COX4 (0.999); ATP20 (0.999); ATP3 (0.999); ATP7 (0.999); ATP1 (0.999); ATP15 (0.999); OLI1 (0.999); ATP6 (0.999); ATP5 (0.999); ATP18 (0.998); KGD2 (0.998); COX12 (0.998); COX13 (0.998); ATP14 (0.997); COX6 (0.997); COR1 (0.995); ATP17 (0.993); RIP1 (0.993)
Homologues (species, bitscore): ATP5D (Homo sapiens, 78.2); Atp5d (Mus musculus, 81.3); atp5d (Danio rerio, 87.8); atp5d (Xenopus tropicalis, 87.0); ATPsyndelta (Drosophila melanogaster, 95.9); F58F12.1 (Caenorhabditis elegans, 82.0); AT5G47030 (Arabidopsis thaliana, 95.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:428276-428758:+ | gene-YDL004W_AKU4011 | rna-NM_001180063.1_AKU4011 | cds-NP_010280.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:120649-121131:- | gene-YDL004W_BG1 | rna-NM_001180063.1_BG1 | cds-NP_010280.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:448878-449360:+ | gene-YDL004W_Bruggeman | rna-NM_001180063.1_Bruggeman | cds-NP_010280.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:441725-442207:+ | gene-YDL004W_CAT1 | rna-NM_001180063.1_CAT1 | cds-NP_010280.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:425487-425969:+ | gene-YDL004W_CBS1585 | rna-NM_001180063.1_CBS1585 | cds-NP_010280.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:442253-442735:+ | gene-YDL004W_CBS436 | rna-NM_001180063.1_CBS436 | cds-NP_010280.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:422735-423217:+ | gene-YDL004W_CBS6412 | rna-NM_001180063.1_CBS6412 | cds-NP_010280.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:444425-444907:+ | gene-YDL004W_CBS6413 | rna-NM_001180063.1_CBS6413 | cds-NP_010280.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:441892-442374:+ | gene-YDL004W_CENPK1137D | rna-NM_001180063.1_CENPK1137D | cds-NP_010280.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:437109-437591:+ | gene-YDL004W_EthanolRed | rna-NM_001180063.1_EthanolRed | cds-NP_010280.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:443280-443762:+ | gene-YDL004W_FaliES1 | rna-NM_001180063.1_FaliES1 | cds-NP_010280.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:28278-28760:- | gene-YDL004W_JAY291 | rna-NM_001180063.1_JAY291 | cds-NP_010280.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:442749-443231:+ | gene-YDL004W_MUCL30387 | rna-NM_001180063.1_MUCL30387 | cds-NP_010280.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:433211-433693:+ | gene-YDL004W_MUCL30388 | rna-NM_001180063.1_MUCL30388 | cds-NP_010280.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:426856-427338:+ | gene-YDL004W_MUCL39482 | rna-NM_001180063.1_MUCL39482 | cds-NP_010280.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:348284-348766:+ | gene-YDL004W_MUCL42920 | rna-NM_001180063.1_MUCL42920 | cds-NP_010280.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:442952-443434:+ | gene-YDL004W_NCIM3186 | rna-NM_001180063.1_NCIM3186 | cds-NP_010280.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:425778-426260:+ | gene-YDL004W_NCYC1407 | rna-NM_001180063.1_NCYC1407 | cds-NP_010280.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:441357-441839:+ | gene-YDL004W_PE2H3 | rna-NM_001180063.1_PE2H3 | cds-NP_010280.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:440716-441198:+ | gene-YDL004W_PE2H4 | rna-NM_001180063.1_PE2H4 | cds-NP_010280.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:443029-443511:+ | gene-YDL004W_S288C | rna-NM_001180063.1_S288C | cds-NP_010280.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:28467-28949:- | gene-YDL004W_SA1 | rna-NM_001180063.1_SA1 | cds-NP_010280.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:442757-443239:+ | gene-YDL004W_ThermosaccDry | rna-NM_001180063.1_ThermosaccDry | cds-NP_010280.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:447214-447696:+ | gene-YDL004W_VR1 | rna-NM_001180063.1_VR1 | cds-NP_010280.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:440654-441136:+ | gene-YDL004W_ZTW1 | rna-NM_001180063.1_ZTW1 | cds-NP_010280.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:445001-445480:+ | gene-YDL004W_Sparadoxus | rna-NM_001180063.1_Sparadoxus | cds-NP_010280.1_Sparadoxus | 89.6 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |