Gene name: ATP12
Reference locus (S288C): YJL180C
Gene biotype: protein_coding
Description: Protein ATP12, mitochondrial; Assembly factor for F1 sector of mitochondrial F1F0 ATP synthase; conserved protein; required for assembly of alpha and beta subunits into F1 sector of mitochondrial F1F0 ATP synthase; human homolog ATPAF2 can complement yeast atp12 mutant; mutation of human homolog reduces active ATP synthase levels and is associated with the disorder ATPAF2 deficiency
Top 10 interactors (score): ATP11 (0.998); ATP2 (0.972); ATP1 (0.969); FMC1 (0.961); MRPL17 (0.947); ATP23 (0.92); MRPL8 (0.917); ATG5 (0.909); ACP1 (0.907); ATP6 (0.906); ATG4 (0.904); ATG10 (0.904); ATG3 (0.903); ATG7 (0.903); ATG16 (0.902); ATP10 (0.861); ATG8 (0.858); ATG12 (0.856); ATP4 (0.823); SHY1 (0.818)
Homologues (species, bitscore): ATPAF2 (Homo sapiens, 55.1); Atpaf2 (Mus musculus, 55.1); atpaf2 (Danio rerio, 61.6); atpaf2 (Xenopus tropicalis, 58.5); Y116A8C.27 (Caenorhabditis elegans, 53.1); AT5G40660 (Arabidopsis thaliana, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:75977-76954:- | gene-YJL180C_AKU4011 | rna-NM_001181613.1_AKU4011 | cds-NP_012355.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:53303-54280:- | gene-YJL180C_BG1 | rna-NM_001181613.1_BG1 | cds-NP_012355.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:87805-88782:- | gene-YJL180C_Bruggeman | rna-NM_001181613.1_Bruggeman | cds-NP_012355.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:91274-92251:- | gene-YJL180C_CAT1 | rna-NM_001181613.1_CAT1 | cds-NP_012355.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:81612-82589:- | gene-YJL180C_CBS1585 | rna-NM_001181613.1_CBS1585 | cds-NP_012355.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:106370-107347:- | gene-YJL180C_CBS436 | rna-NM_001181613.1_CBS436 | cds-NP_012355.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:78094-79071:- | gene-YJL180C_CBS6412 | rna-NM_001181613.1_CBS6412 | cds-NP_012355.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:79087-80064:- | gene-YJL180C_CBS6413 | rna-NM_001181613.1_CBS6413 | cds-NP_012355.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:70058-71035:- | gene-YJL180C_CENPK1137D | rna-NM_001181613.1_CENPK1137D | cds-NP_012355.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:80273-81250:- | gene-YJL180C_EthanolRed | rna-NM_001181613.1_EthanolRed | cds-NP_012355.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:85550-86527:- | gene-YJL180C_FaliES1 | rna-NM_001181613.1_FaliES1 | cds-NP_012355.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:32208-33185:+ | gene-YJL180C_JAY291 | rna-NM_001181613.1_JAY291 | cds-NP_012355.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:89533-90510:- | gene-YJL180C_MUCL30387 | rna-NM_001181613.1_MUCL30387 | cds-NP_012355.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:85694-86671:- | gene-YJL180C_MUCL30388 | rna-NM_001181613.1_MUCL30388 | cds-NP_012355.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:80353-81330:- | gene-YJL180C_MUCL39482 | rna-NM_001181613.1_MUCL39482 | cds-NP_012355.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:84961-85938:- | gene-YJL180C_MUCL42920 | rna-NM_001181613.1_MUCL42920 | cds-NP_012355.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:87562-88539:- | gene-YJL180C_NCIM3186 | rna-NM_001181613.1_NCIM3186 | cds-NP_012355.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:78965-79942:- | gene-YJL180C_NCYC1407 | rna-NM_001181613.1_NCYC1407 | cds-NP_012355.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:91668-92645:- | gene-YJL180C_PE2H3 | rna-NM_001181613.1_PE2H3 | cds-NP_012355.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:91307-92284:- | gene-YJL180C_PE2H4 | rna-NM_001181613.1_PE2H4 | cds-NP_012355.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:87583-88560:- | gene-YJL180C_S288C | rna-NM_001181613.1_S288C | cds-NP_012355.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:65313-66290:+ | gene-YJL180C_SA1 | rna-NM_001181613.1_SA1 | cds-NP_012355.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:78744-79721:- | gene-YJL180C_ThermosaccDry | rna-NM_001181613.1_ThermosaccDry | cds-NP_012355.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:85626-86603:- | gene-YJL180C_VR1 | rna-NM_001181613.1_VR1 | cds-NP_012355.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:66330-67307:- | gene-YJL180C_ZTW1 | rna-NM_001181613.1_ZTW1 | cds-NP_012355.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:90748-91725:- | gene-YJL180C_Sparadoxus | rna-NM_001181613.1_Sparadoxus | cds-NP_012355.1_Sparadoxus | 86.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |