Gene name: ATM1
Reference locus (S288C): YMR301C
Gene biotype: protein_coding
Description: Iron-sulfur clusters transporter ATM1, mitochondrial; Mitochondrial inner membrane ATP-binding cassette (ABC) transporter; exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; human homolog ABCB7 can complement yeast null mutant; Belongs to the ABC transporter superfamily. ABCB family. Heavy Metal importer (TC 3.A.1.210) subfamily
Top 10 interactors (score): NBP35 (0.996); CFD1 (0.989); YAH1 (0.987); YFH1 (0.98); NFS1 (0.977); ISA1 (0.974); GRX5 (0.972); TAH18 (0.954); DRE2 (0.953); NAR1 (0.953); ISA2 (0.941); NFU1 (0.937); ISU1 (0.937); HEM15 (0.934); RLI1 (0.929); ISD11 (0.922); LEU1 (0.91); MRS3 (0.909); JAC1 (0.906); GRX3 (0.905)
Homologues (species, bitscore): ABCB7 (Homo sapiens, 601.7); Abcb7 (Mus musculus, 600.1); abcb7 (Danio rerio, 609.8); abcb7 (Xenopus tropicalis, 625.2); ABCB7 (Drosophila melanogaster, 570.1); abtm-1 (Caenorhabditis elegans, 565.1); ABCB25 (Arabidopsis thaliana, 612.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:906607-908679:- | gene-YMR301C_AKU4011 | rna-NM_001182810.1_AKU4011 | cds-NP_014030.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:45034-47106:+ | gene-YMR301C_BG1 | rna-NM_001182810.1_BG1 | cds-NP_014030.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:851812-853884:- | gene-YMR301C_Bruggeman | rna-NM_001182810.1_Bruggeman | cds-NP_014030.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:855093-857165:- | gene-YMR301C_CAT1 | rna-NM_001182810.1_CAT1 | cds-NP_014030.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:838858-840930:- | gene-YMR301C_CBS1585 | rna-NM_001182810.1_CBS1585 | cds-NP_014030.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:861168-863240:- | gene-YMR301C_CBS436 | rna-NM_001182810.1_CBS436 | cds-NP_014030.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:950433-952505:- | gene-YMR301C_CBS6412 | rna-NM_001182810.1_CBS6412 | cds-NP_014030.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:837976-840048:- | gene-YMR301C_CBS6413 | rna-NM_001182810.1_CBS6413 | cds-NP_014030.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:862085-864157:- | gene-YMR301C_CENPK1137D | rna-NM_001182810.1_CENPK1137D | cds-NP_014030.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:899290-901362:- | gene-YMR301C_EthanolRed | rna-NM_001182810.1_EthanolRed | cds-NP_014030.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:845317-847389:- | gene-YMR301C_FaliES1 | rna-NM_001182810.1_FaliES1 | cds-NP_014030.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:4343-6415:+ | gene-YMR301C_JAY291 | rna-NM_001182810.1_JAY291 | cds-NP_014030.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:845637-847709:- | gene-YMR301C_MUCL30387 | rna-NM_001182810.1_MUCL30387 | cds-NP_014030.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:855030-857102:- | gene-YMR301C_MUCL30388 | rna-NM_001182810.1_MUCL30388 | cds-NP_014030.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:839923-841995:- | gene-YMR301C_MUCL39482 | rna-NM_001182810.1_MUCL39482 | cds-NP_014030.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:848743-850815:- | gene-YMR301C_MUCL42920 | rna-NM_001182810.1_MUCL42920 | cds-NP_014030.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:867509-869581:- | gene-YMR301C_NCIM3186 | rna-NM_001182810.1_NCIM3186 | cds-NP_014030.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:839576-841648:- | gene-YMR301C_NCYC1407 | rna-NM_001182810.1_NCYC1407 | cds-NP_014030.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:855389-857461:- | gene-YMR301C_PE2H3 | rna-NM_001182810.1_PE2H3 | cds-NP_014030.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:851365-853437:- | gene-YMR301C_PE2H4 | rna-NM_001182810.1_PE2H4 | cds-NP_014030.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:867555-869627:- | gene-YMR301C_S288C | rna-NM_001182810.1_S288C | cds-NP_014030.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:45347-47419:- | gene-YMR301C_SA1 | rna-NM_001182810.1_SA1 | cds-NP_014030.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:841485-843557:- | gene-YMR301C_ThermosaccDry | rna-NM_001182810.1_ThermosaccDry | cds-NP_014030.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:855242-857314:- | gene-YMR301C_VR1 | rna-NM_001182810.1_VR1 | cds-NP_014030.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:256725-258797:- | gene-YMR301C_ZTW1 | rna-NM_001182810.1_ZTW1 | cds-NP_014030.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:860117-862189:- | gene-YMR301C_Sparadoxus | rna-NM_001182810.1_Sparadoxus | cds-NP_014030.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |