Gene name: ATG42
Reference locus (S288C): YBR139W
Gene biotype: protein_coding
Description: Putative serine type carboxypeptidase; role in phytochelatin synthesis; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner
Top 10 interactors (score): GTT1 (0.932); ECM4 (0.913); GTT2 (0.913); URE2 (0.913); GAD1 (0.912); GTO1 (0.903); GTT3 (0.9); GSY2 (0.891); PEP4 (0.888); GLK1 (0.861); LSP1 (0.857); TPS1 (0.854); PNC1 (0.846); YBR056W (0.837); PGM2 (0.836); TPK2 (0.813); TSL1 (0.812); TFS1 (0.81); APE1 (0.802); TPK1 (0.798)
Homologues (species, bitscore): CTSA (Homo sapiens, 189.9); Ctsa (Mus musculus, 197.6); LOC792966 (Danio rerio, 164.9); ctsa (Xenopus tropicalis, 199.1); CG4572 (Drosophila melanogaster, 133.3); F13D12.6 (Caenorhabditis elegans, 174.1); scpl47 (Arabidopsis thaliana, 253.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:498550-500076:+ | gene-YBR139W_AKU4011 | rna-NM_001178487.3_AKU4011 | cds-NP_009697.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:489122-490648:+ | gene-YBR139W_BG1 | rna-NM_001178487.3_BG1 | cds-NP_009697.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:500355-501881:+ | gene-YBR139W_Bruggeman | rna-NM_001178487.3_Bruggeman | cds-NP_009697.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:395695-397221:+ | gene-YBR139W_CAT1 | rna-NM_001178487.3_CAT1 | cds-NP_009697.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:490330-491856:+ | gene-YBR139W_CBS1585 | rna-NM_001178487.3_CBS1585 | cds-NP_009697.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:498445-499971:+ | gene-YBR139W_CBS436 | rna-NM_001178487.3_CBS436 | cds-NP_009697.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:588196-589722:+ | gene-YBR139W_CBS6412 | rna-NM_001178487.3_CBS6412 | cds-NP_009697.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:495965-497491:+ | gene-YBR139W_CBS6413 | rna-NM_001178487.3_CBS6413 | cds-NP_009697.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:509434-510960:+ | gene-YBR139W_CENPK1137D | rna-NM_001178487.3_CENPK1137D | cds-NP_009697.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:624572-626098:+ | gene-YBR139W_EthanolRed | rna-NM_001178487.3_EthanolRed | cds-NP_009697.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:514584-516110:+ | gene-YBR139W_FaliES1 | rna-NM_001178487.3_FaliES1 | cds-NP_009697.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:38045-39571:+ | gene-YBR139W_JAY291 | rna-NM_001178487.3_JAY291 | cds-NP_009697.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:503229-504755:+ | gene-YBR139W_MUCL30387 | rna-NM_001178487.3_MUCL30387 | cds-NP_009697.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:502519-504045:+ | gene-YBR139W_MUCL30388 | rna-NM_001178487.3_MUCL30388 | cds-NP_009697.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:488717-490243:+ | gene-YBR139W_MUCL39482 | rna-NM_001178487.3_MUCL39482 | cds-NP_009697.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:498621-500147:+ | gene-YBR139W_MUCL42920 | rna-NM_001178487.3_MUCL42920 | cds-NP_009697.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:515461-516987:+ | gene-YBR139W_NCIM3186 | rna-NM_001178487.3_NCIM3186 | cds-NP_009697.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:491256-492782:+ | gene-YBR139W_NCYC1407 | rna-NM_001178487.3_NCYC1407 | cds-NP_009697.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:503891-505417:+ | gene-YBR139W_PE2H3 | rna-NM_001178487.3_PE2H3 | cds-NP_009697.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:501567-503093:+ | gene-YBR139W_PE2H4 | rna-NM_001178487.3_PE2H4 | cds-NP_009697.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:515664-517190:+ | gene-YBR139W_S288C | rna-NM_001178487.3_S288C | cds-NP_009697.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:36848-38374:+ | gene-YBR139W_SA1 | rna-NM_001178487.3_SA1 | cds-NP_009697.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:513597-515123:+ | gene-YBR139W_ThermosaccDry | rna-NM_001178487.3_ThermosaccDry | cds-NP_009697.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:495097-496623:+ | gene-YBR139W_VR1 | rna-NM_001178487.3_VR1 | cds-NP_009697.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:488744-490270:+ | gene-YBR139W_ZTW1 | rna-NM_001178487.3_ZTW1 | cds-NP_009697.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:525986-527513:+ | gene-YBR139W_Sparadoxus | rna-NM_001178487.3_Sparadoxus | cds-NP_009697.3_Sparadoxus | 88.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |