Gene name: ATG40
Reference locus (S288C): YOR152C
Gene biotype: protein_coding
Description: Autophagy-related protein 40; Autophagy receptor with a role in endoplasmic reticulum degradation; involved specifically in autophagy of cortical and cytoplasmic ER in response to nitrogen starvation or rapamycin treatment; localizes to the cortical and cytoplasmic ER; similar to human FAM134B, which is also involved in ER autophagy and is associated with sensory neuropathy
Top 10 interactors (score): ATG8 (0.974); ATG39 (0.964); ATG11 (0.858); ATG36 (0.85); ATG34 (0.828); SEC62 (0.777); ATG32 (0.776); ATG19 (0.76); ATG41 (0.714); ATG31 (0.712); ATG9 (0.711); ATG7 (0.711); ATG5 (0.698); CUE5 (0.695); ATG38 (0.695); ATG12 (0.65); ATG3 (0.636); ATG29 (0.618); ATG17 (0.595); ATG18 (0.591)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:615046-615816:- | gene-YOR152C_AKU4011 | rna-NM_001183571.1_AKU4011 | cds-NP_014795.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:16892-17662:- | gene-YOR152C_BG1 | rna-NM_001183571.1_BG1 | cds-NP_014795.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:599209-599979:- | gene-YOR152C_Bruggeman | rna-NM_001183571.1_Bruggeman | cds-NP_014795.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:599227-599997:- | gene-YOR152C_CAT1 | rna-NM_001183571.1_CAT1 | cds-NP_014795.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:597521-598291:- | gene-YOR152C_CBS1585 | rna-NM_001183571.1_CBS1585 | cds-NP_014795.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:595931-596701:- | gene-YOR152C_CBS436 | rna-NM_001183571.1_CBS436 | cds-NP_014795.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:595159-595929:- | gene-YOR152C_CBS6412 | rna-NM_001183571.1_CBS6412 | cds-NP_014795.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:603929-604699:- | gene-YOR152C_CBS6413 | rna-NM_001183571.1_CBS6413 | cds-NP_014795.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:617274-618044:- | gene-YOR152C_CENPK1137D | rna-NM_001183571.1_CENPK1137D | cds-NP_014795.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:591358-592128:- | gene-YOR152C_EthanolRed | rna-NM_001183571.1_EthanolRed | cds-NP_014795.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:596211-596981:- | gene-YOR152C_FaliES1 | rna-NM_001183571.1_FaliES1 | cds-NP_014795.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:46569-47339:+ | gene-YOR152C_JAY291 | rna-NM_001183571.1_JAY291 | cds-NP_014795.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:604016-604786:- | gene-YOR152C_MUCL30387 | rna-NM_001183571.1_MUCL30387 | cds-NP_014795.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:610773-611543:- | gene-YOR152C_MUCL30388 | rna-NM_001183571.1_MUCL30388 | cds-NP_014795.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:605443-606213:- | gene-YOR152C_MUCL39482 | rna-NM_001183571.1_MUCL39482 | cds-NP_014795.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:614899-615669:- | gene-YOR152C_MUCL42920 | rna-NM_001183571.1_MUCL42920 | cds-NP_014795.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:617407-618177:- | gene-YOR152C_NCIM3186 | rna-NM_001183571.1_NCIM3186 | cds-NP_014795.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:605566-606336:- | gene-YOR152C_NCYC1407 | rna-NM_001183571.1_NCYC1407 | cds-NP_014795.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:604072-604842:- | gene-YOR152C_PE2H3 | rna-NM_001183571.1_PE2H3 | cds-NP_014795.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:614449-615219:- | gene-YOR152C_PE2H4 | rna-NM_001183571.1_PE2H4 | cds-NP_014795.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:617518-618288:- | gene-YOR152C_S288C | rna-NM_001183571.1_S288C | cds-NP_014795.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:34058-34828:- | gene-YOR152C_SA1 | rna-NM_001183571.1_SA1 | cds-NP_014795.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:595394-596164:- | gene-YOR152C_ThermosaccDry | rna-NM_001183571.1_ThermosaccDry | cds-NP_014795.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:659072-659842:- | gene-YOR152C_VR1 | rna-NM_001183571.1_VR1 | cds-NP_014795.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:328840-329610:- | gene-YOR152C_ZTW1 | rna-NM_001183571.1_ZTW1 | cds-NP_014795.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:600550-601320:- | gene-YOR152C_Sparadoxus | rna-NM_001183571.1_Sparadoxus | cds-NP_014795.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |