Gene name: ATG39
Reference locus (S288C): YLR312C
Gene biotype: protein_coding
Description: Autophagy-related protein 39; Autophagy receptor with a role in degradation of the ER and nucleus; involved specifically in autophagy of perinuclear endoplasmic reticulum in response to nitrogen starvation or rapamycin treatment; localizes to the perinuclear ER
Top 10 interactors (score): ATG40 (0.964); ATG11 (0.952); ATG8 (0.932); ATG36 (0.875); ATG34 (0.866); YLR311C (0.816); ATG32 (0.793); ATG19 (0.774); ATG7 (0.772); SEC62 (0.749); HXT5 (0.733); ATG5 (0.711); ATG41 (0.699); ATG31 (0.695); ATG9 (0.694); NVJ1 (0.693); ATG29 (0.693); ATG38 (0.693); ATG12 (0.69); CUE5 (0.657)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:706090-707286:- | gene-YLR312C_AKU4011 | rna-NM_001182200.1_AKU4011 | cds-NP_013415.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:25355-26551:+ | gene-YLR312C_BG1 | rna-NM_001182200.1_BG1 | cds-NP_013415.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:741922-743118:- | gene-YLR312C_Bruggeman | rna-NM_001182200.1_Bruggeman | cds-NP_013415.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:740092-741288:- | gene-YLR312C_CAT1 | rna-NM_001182200.1_CAT1 | cds-NP_013415.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:741017-742213:- | gene-YLR312C_CBS1585 | rna-NM_001182200.1_CBS1585 | cds-NP_013415.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:725616-726812:- | gene-YLR312C_CBS436 | rna-NM_001182200.1_CBS436 | cds-NP_013415.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:703658-704854:- | gene-YLR312C_CBS6412 | rna-NM_001182200.1_CBS6412 | cds-NP_013415.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:741679-742875:- | gene-YLR312C_CBS6413 | rna-NM_001182200.1_CBS6413 | cds-NP_013415.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:742249-743445:- | gene-YLR312C_CENPK1137D | rna-NM_001182200.1_CENPK1137D | cds-NP_013415.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:699370-700566:- | gene-YLR312C_EthanolRed | rna-NM_001182200.1_EthanolRed | cds-NP_013415.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:728570-729766:- | gene-YLR312C_FaliES1 | rna-NM_001182200.1_FaliES1 | cds-NP_013415.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:38073-39269:+ | gene-YLR312C_JAY291 | rna-NM_001182200.1_JAY291 | cds-NP_013415.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:741151-742347:- | gene-YLR312C_MUCL30387 | rna-NM_001182200.1_MUCL30387 | cds-NP_013415.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:746734-747930:- | gene-YLR312C_MUCL30388 | rna-NM_001182200.1_MUCL30388 | cds-NP_013415.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:742247-743443:- | gene-YLR312C_MUCL39482 | rna-NM_001182200.1_MUCL39482 | cds-NP_013415.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:737400-738596:- | gene-YLR312C_MUCL42920 | rna-NM_001182200.1_MUCL42920 | cds-NP_013415.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:757611-758807:- | gene-YLR312C_NCIM3186 | rna-NM_001182200.1_NCIM3186 | cds-NP_013415.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:751589-752785:- | gene-YLR312C_NCYC1407 | rna-NM_001182200.1_NCYC1407 | cds-NP_013415.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:739384-740580:- | gene-YLR312C_PE2H3 | rna-NM_001182200.1_PE2H3 | cds-NP_013415.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:739128-740324:- | gene-YLR312C_PE2H4 | rna-NM_001182200.1_PE2H4 | cds-NP_013415.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:757637-758833:- | gene-YLR312C_S288C | rna-NM_001182200.1_S288C | cds-NP_013415.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:25463-26659:+ | gene-YLR312C_SA1 | rna-NM_001182200.1_SA1 | cds-NP_013415.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:730464-731660:- | gene-YLR312C_ThermosaccDry | rna-NM_001182200.1_ThermosaccDry | cds-NP_013415.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:742600-743796:- | gene-YLR312C_VR1 | rna-NM_001182200.1_VR1 | cds-NP_013415.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:68886-70082:- | gene-YLR312C_ZTW1 | rna-NM_001182200.1_ZTW1 | cds-NP_013415.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:716633-717829:- | gene-YLR312C_Sparadoxus | rna-NM_001182200.1_Sparadoxus | cds-NP_013415.1_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |