Gene name: ATG38
Reference locus (S288C): YLR211C
Gene biotype: protein_coding
Description: Autophagy-related protein 38; Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I; required for the integrity of the active PtdIns-3-kinase complex I by maintaining an association between Vps15p-Vps34p and Atg14p-Vps30p subcomplexes; localizes to the pre-autophagosomal structure (PAS) in an Atg14p-dependent manner; ATG38 is non-essential but is required for macroautophagy
Top 10 interactors (score): VPS30 (0.997); VPS15 (0.996); VPS34 (0.994); ATG14 (0.992); ATG18 (0.973); VPS38 (0.931); VAC7 (0.904); FAB1 (0.904); FIG4 (0.903); VAC14 (0.9); ATG31 (0.813); ATG29 (0.779); ATG9 (0.759); ATG2 (0.75); ATG4 (0.749); ATG3 (0.749); ATG41 (0.747); ATG23 (0.746); ATG36 (0.745); ATG21 (0.745)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:517937-518676:- | gene-YLR211C_AKU4011 | rna-NM_001182098.1_AKU4011 | cds-NP_013312.2_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:75194-75933:- | gene-YLR211C_BG1 | rna-NM_001182098.1_BG1 | cds-NP_013312.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:558167-558906:- | gene-YLR211C_Bruggeman | rna-NM_001182098.1_Bruggeman | cds-NP_013312.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:557812-558551:- | gene-YLR211C_CAT1 | rna-NM_001182098.1_CAT1 | cds-NP_013312.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:553429-554168:- | gene-YLR211C_CBS1585 | rna-NM_001182098.1_CBS1585 | cds-NP_013312.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:543630-544369:- | gene-YLR211C_CBS436 | rna-NM_001182098.1_CBS436 | cds-NP_013312.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:521991-522730:- | gene-YLR211C_CBS6412 | rna-NM_001182098.1_CBS6412 | cds-NP_013312.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:553726-554465:- | gene-YLR211C_CBS6413 | rna-NM_001182098.1_CBS6413 | cds-NP_013312.2_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:548437-549176:- | gene-YLR211C_CENPK1137D | rna-NM_001182098.1_CENPK1137D | cds-NP_013312.2_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:517449-518188:- | gene-YLR211C_EthanolRed | rna-NM_001182098.1_EthanolRed | cds-NP_013312.2_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:546376-547115:- | gene-YLR211C_FaliES1 | rna-NM_001182098.1_FaliES1 | cds-NP_013312.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:73281-74020:- | gene-YLR211C_JAY291 | rna-NM_001182098.1_JAY291 | cds-NP_013312.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:558218-558957:- | gene-YLR211C_MUCL30387 | rna-NM_001182098.1_MUCL30387 | cds-NP_013312.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:563156-563895:- | gene-YLR211C_MUCL30388 | rna-NM_001182098.1_MUCL30388 | cds-NP_013312.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:554412-555151:- | gene-YLR211C_MUCL39482 | rna-NM_001182098.1_MUCL39482 | cds-NP_013312.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:554922-555661:- | gene-YLR211C_MUCL42920 | rna-NM_001182098.1_MUCL42920 | cds-NP_013312.2_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:563766-564505:- | gene-YLR211C_NCIM3186 | rna-NM_001182098.1_NCIM3186 | cds-NP_013312.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:546831-547570:- | gene-YLR211C_NCYC1407 | rna-NM_001182098.1_NCYC1407 | cds-NP_013312.2_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:551082-551821:- | gene-YLR211C_PE2H3 | rna-NM_001182098.1_PE2H3 | cds-NP_013312.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:550826-551565:- | gene-YLR211C_PE2H4 | rna-NM_001182098.1_PE2H4 | cds-NP_013312.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:563792-564531:- | gene-YLR211C_S288C | rna-NM_001182098.1_S288C | cds-NP_013312.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:73330-74069:- | gene-YLR211C_SA1 | rna-NM_001182098.1_SA1 | cds-NP_013312.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:548869-549608:- | gene-YLR211C_ThermosaccDry | rna-NM_001182098.1_ThermosaccDry | cds-NP_013312.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:560217-560956:- | gene-YLR211C_VR1 | rna-NM_001182098.1_VR1 | cds-NP_013312.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:73157-73896:- | gene-YLR211C_ZTW1 | rna-NM_001182098.1_ZTW1 | cds-NP_013312.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:534981-535735:- | gene-YLR211C_Sparadoxus | rna-NM_001182098.1_Sparadoxus | cds-NP_013312.2_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |