Gene name: ATG29
Reference locus (S288C): YPL166W
Gene biotype: protein_coding
Description: Autophagy-related protein 29; Autophagy-specific protein; required for recruiting other ATG proteins to the pre-autophagosomal structure (PAS); interacts with Atg17p and localizas to the PAS in a manner interdependent with Atg17p and Cis1p; not conserved; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; Belongs to the ATG29 family
Top 10 interactors (score): ATG31 (0.999); ATG13 (0.999); ATG17 (0.999); ATG11 (0.998); ATG1 (0.998); ATG9 (0.986); ATG5 (0.947); ATG4 (0.936); ATG23 (0.934); ATG19 (0.915); SNX4 (0.904); ATG8 (0.9); ATG2 (0.899); ATG18 (0.897); ATG10 (0.896); ATG12 (0.895); ATG7 (0.873); ATG15 (0.869); ATG16 (0.861); ATG21 (0.859)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:215011-215652:+ | gene-YPL166W_AKU4011 | rna-NM_001183980.1_AKU4011 | cds-NP_015159.1_AKU4011 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:420669-421310:+ | gene-YPL166W_BG1 | rna-NM_001183980.1_BG1 | cds-NP_015159.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:240993-241634:+ | gene-YPL166W_Bruggeman | rna-NM_001183980.1_Bruggeman | cds-NP_015159.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:237664-238305:+ | gene-YPL166W_CAT1 | rna-NM_001183980.1_CAT1 | cds-NP_015159.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:219073-219714:+ | gene-YPL166W_CBS1585 | rna-NM_001183980.1_CBS1585 | cds-NP_015159.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:233727-234368:+ | gene-YPL166W_CBS436 | rna-NM_001183980.1_CBS436 | cds-NP_015159.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:223750-224391:+ | gene-YPL166W_CBS6412 | rna-NM_001183980.1_CBS6412 | cds-NP_015159.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:215710-216351:+ | gene-YPL166W_CBS6413 | rna-NM_001183980.1_CBS6413 | cds-NP_015159.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:237222-237863:+ | gene-YPL166W_CENPK1137D | rna-NM_001183980.1_CENPK1137D | cds-NP_015159.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:213751-214392:+ | gene-YPL166W_EthanolRed | rna-NM_001183980.1_EthanolRed | cds-NP_015159.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:221343-221984:+ | gene-YPL166W_FaliES1 | rna-NM_001183980.1_FaliES1 | cds-NP_015159.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:143927-144568:- | gene-YPL166W_JAY291 | rna-NM_001183980.1_JAY291 | cds-NP_015159.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:232237-232878:+ | gene-YPL166W_MUCL30387 | rna-NM_001183980.1_MUCL30387 | cds-NP_015159.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:230258-230899:+ | gene-YPL166W_MUCL30388 | rna-NM_001183980.1_MUCL30388 | cds-NP_015159.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:212402-213043:+ | gene-YPL166W_MUCL39482 | rna-NM_001183980.1_MUCL39482 | cds-NP_015159.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:269125-269766:+ | gene-YPL166W_MUCL42920 | rna-NM_001183980.1_MUCL42920 | cds-NP_015159.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:237321-237962:+ | gene-YPL166W_NCIM3186 | rna-NM_001183980.1_NCIM3186 | cds-NP_015159.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:218858-219499:+ | gene-YPL166W_NCYC1407 | rna-NM_001183980.1_NCYC1407 | cds-NP_015159.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:226289-226930:+ | gene-YPL166W_PE2H3 | rna-NM_001183980.1_PE2H3 | cds-NP_015159.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:225932-226573:+ | gene-YPL166W_PE2H4 | rna-NM_001183980.1_PE2H4 | cds-NP_015159.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:237338-237979:+ | gene-YPL166W_S288C | rna-NM_001183980.1_S288C | cds-NP_015159.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:135702-136343:- | gene-YPL166W_SA1 | rna-NM_001183980.1_SA1 | cds-NP_015159.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:221141-221782:+ | gene-YPL166W_ThermosaccDry | rna-NM_001183980.1_ThermosaccDry | cds-NP_015159.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:236060-236701:+ | gene-YPL166W_VR1 | rna-NM_001183980.1_VR1 | cds-NP_015159.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:220469-221110:+ | gene-YPL166W_ZTW1 | rna-NM_001183980.1_ZTW1 | cds-NP_015159.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:222043-222684:+ | gene-YPL166W_Sparadoxus | rna-NM_001183980.1_Sparadoxus | cds-NP_015159.1_Sparadoxus | 87.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |