Gene name: ATG23
Reference locus (S288C): YLR431C
Gene biotype: protein_coding
Description: Autophagy-related protein 23; Peripheral membrane protein required for autophagy and CVT; required for cytoplasm-to-vacuole targeting (Cvt) pathway and efficient macroautophagy; cycles between the phagophore assembly site (PAS) and non-PAS locations; forms a complex with Atg9p and Atg27p; Belongs to the ATG23 family
Top 10 interactors (score): ATG9 (0.997); ATG27 (0.997); ATG18 (0.96); ATG1 (0.945); ATG13 (0.936); ATG29 (0.934); ATG4 (0.906); SNX4 (0.897); ATG11 (0.895); ATG2 (0.895); ATG14 (0.894); ATG15 (0.892); ATG3 (0.891); ATG17 (0.875); ATG19 (0.87); ATG20 (0.868); ATG7 (0.867); ATG5 (0.857); VPS30 (0.839); ATG32 (0.832)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:938599-939960:- | gene-YLR431C_AKU4011 | rna-NM_001182319.1_AKU4011 | cds-NP_013535.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:171079-172440:- | gene-YLR431C_BG1 | rna-NM_001182319.1_BG1 | cds-NP_013535.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:976902-978263:- | gene-YLR431C_Bruggeman | rna-NM_001182319.1_Bruggeman | cds-NP_013535.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:972915-974276:- | gene-YLR431C_CAT1 | rna-NM_001182319.1_CAT1 | cds-NP_013535.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:974196-975557:- | gene-YLR431C_CBS1585 | rna-NM_001182319.1_CBS1585 | cds-NP_013535.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:963539-964900:- | gene-YLR431C_CBS436 | rna-NM_001182319.1_CBS436 | cds-NP_013535.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1010236-1011597:- | gene-YLR431C_CBS6412 | rna-NM_001182319.1_CBS6412 | cds-NP_013535.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:974981-976342:- | gene-YLR431C_CBS6413 | rna-NM_001182319.1_CBS6413 | cds-NP_013535.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:984964-986325:- | gene-YLR431C_CENPK1137D | rna-NM_001182319.1_CENPK1137D | cds-NP_013535.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:931627-932988:- | gene-YLR431C_EthanolRed | rna-NM_001182319.1_EthanolRed | cds-NP_013535.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:966898-968259:- | gene-YLR431C_FaliES1 | rna-NM_001182319.1_FaliES1 | cds-NP_013535.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:50437-51798:+ | gene-YLR431C_JAY291 | rna-NM_001182319.1_JAY291 | cds-NP_013535.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:975763-977124:- | gene-YLR431C_MUCL30387 | rna-NM_001182319.1_MUCL30387 | cds-NP_013535.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:983121-984482:- | gene-YLR431C_MUCL30388 | rna-NM_001182319.1_MUCL30388 | cds-NP_013535.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:975416-976777:- | gene-YLR431C_MUCL39482 | rna-NM_001182319.1_MUCL39482 | cds-NP_013535.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:975912-977273:- | gene-YLR431C_MUCL42920 | rna-NM_001182319.1_MUCL42920 | cds-NP_013535.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1000316-1001677:- | gene-YLR431C_NCIM3186 | rna-NM_001182319.1_NCIM3186 | cds-NP_013535.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:984595-985956:- | gene-YLR431C_NCYC1407 | rna-NM_001182319.1_NCYC1407 | cds-NP_013535.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:971289-972650:- | gene-YLR431C_PE2H3 | rna-NM_001182319.1_PE2H3 | cds-NP_013535.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:971033-972394:- | gene-YLR431C_PE2H4 | rna-NM_001182319.1_PE2H4 | cds-NP_013535.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1000342-1001703:- | gene-YLR431C_S288C | rna-NM_001182319.1_S288C | cds-NP_013535.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:58258-59619:+ | gene-YLR431C_SA1 | rna-NM_001182319.1_SA1 | cds-NP_013535.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:969977-971338:- | gene-YLR431C_ThermosaccDry | rna-NM_001182319.1_ThermosaccDry | cds-NP_013535.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:976394-977755:- | gene-YLR431C_VR1 | rna-NM_001182319.1_VR1 | cds-NP_013535.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:300250-301611:- | gene-YLR431C_ZTW1 | rna-NM_001182319.1_ZTW1 | cds-NP_013535.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:949404-950765:- | gene-YLR431C_Sparadoxus | rna-NM_001182319.1_Sparadoxus | cds-NP_013535.1_Sparadoxus | 87.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |