ATG21 (YPL100W)


Gene profile

Gene name: ATG21
Reference locus (S288C): YPL100W
Gene biotype: protein_coding

Description: Autophagy-related protein 21; Phosphoinositide binding protein; required for vesicle formation in the cytoplasm-to-vacuole targeting (Cvt) pathway; binds both phosphatidylinositol (3,5)-bisphosphate and phosphatidylinositol 3-phosphate; WD-40 repeat protein

Top 10 interactors (score): ATG9 (0.989); ATG2 (0.98); ATG12 (0.977); VPS30 (0.973); ATG8 (0.966); ATG5 (0.966); ATG7 (0.96); ATG4 (0.957); SNX4 (0.951); ATG16 (0.936); ATG19 (0.933); ATG1 (0.928); ATG20 (0.927); ATG18 (0.917); VPS15 (0.916); ATG3 (0.913); VPS34 (0.908); ATG17 (0.871); ATG29 (0.859); ATG10 (0.842)

Homologues (species, bitscore): WIPI2 (Homo sapiens, 100.1); Wipi2 (Mus musculus, 97.4); wipi2 (Danio rerio, 99.4); wdr45b (Xenopus tropicalis, 66.2); Atg18a (Drosophila melanogaster, 100.1); atg-18 (Caenorhabditis elegans, 80.5); ATG18D (Arabidopsis thaliana, 73.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005310.1:339514-341004:+ gene-YPL100W_AKU4011 rna-NM_001183914.1_AKU4011 cds-NP_015225.1_AKU4011 99.5 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:545267-546757:+ gene-YPL100W_BG1 rna-NM_001183914.1_BG1 cds-NP_015225.1_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005518.1:365520-367010:+ gene-YPL100W_Bruggeman rna-NM_001183914.1_Bruggeman cds-NP_015225.1_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005534.1:362984-364474:+ gene-YPL100W_CAT1 rna-NM_001183914.1_CAT1 cds-NP_015225.1_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005374.1:343587-345077:+ gene-YPL100W_CBS1585 rna-NM_001183914.1_CBS1585 cds-NP_015225.1_CBS1585 99.5 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005358.1:358259-359749:+ gene-YPL100W_CBS436 rna-NM_001183914.1_CBS436 cds-NP_015225.1_CBS436 99.9 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005342.1:348256-349746:+ gene-YPL100W_CBS6412 rna-NM_001183914.1_CBS6412 cds-NP_015225.1_CBS6412 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005326.1:340223-341713:+ gene-YPL100W_CBS6413 rna-NM_001183914.1_CBS6413 cds-NP_015225.1_CBS6413 99.5 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001537.1:361820-363310:+ gene-YPL100W_CENPK1137D rna-NM_001183914.1_CENPK1137D cds-NP_015225.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:338206-339696:+ gene-YPL100W_EthanolRed rna-NM_001183914.1_EthanolRed cds-NP_015225.1_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005550.1:345798-347288:+ gene-YPL100W_FaliES1 rna-NM_001183914.1_FaliES1 cds-NP_015225.1_FaliES1 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000007.1:18530-20020:- gene-YPL100W_JAY291 rna-NM_001183914.1_JAY291 cds-NP_015225.1_JAY291 99.4 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005422.1:356758-358248:+ gene-YPL100W_MUCL30387 rna-NM_001183914.1_MUCL30387 cds-NP_015225.1_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:581276-582766:+ gene-YPL100W_MUCL30388 rna-NM_001183914.1_MUCL30388 cds-NP_015225.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005294.1:336916-338406:+ gene-YPL100W_MUCL39482 rna-NM_001183914.1_MUCL39482 cds-NP_015225.1_MUCL39482 99.5 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005438.1:394604-396094:+ gene-YPL100W_MUCL42920 rna-NM_001183914.1_MUCL42920 cds-NP_015225.1_MUCL42920 99.5 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:361855-363345:+ gene-YPL100W_NCIM3186 rna-NM_001183914.1_NCIM3186 cds-NP_015225.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005278.1:343369-344859:+ gene-YPL100W_NCYC1407 rna-NM_001183914.1_NCYC1407 cds-NP_015225.1_NCYC1407 99.5 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994155.1:350859-352349:+ gene-YPL100W_PE2H3 rna-NM_001183914.1_PE2H3 cds-NP_015225.1_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999887.1:350482-351972:+ gene-YPL100W_PE2H4 rna-NM_001183914.1_PE2H4 cds-NP_015225.1_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:361872-363362:+ gene-YPL100W_S288C rna-NM_001183914.1_S288C cds-NP_015225.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000012.1:10317-11807:- gene-YPL100W_SA1 rna-NM_001183914.1_SA1 cds-NP_015225.1_SA1 99.9 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005502.1:345596-347086:+ gene-YPL100W_ThermosaccDry rna-NM_001183914.1_ThermosaccDry cds-NP_015225.1_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005470.1:360570-362060:+ gene-YPL100W_VR1 rna-NM_001183914.1_VR1 cds-NP_015225.1_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000033.1:344917-346407:+ gene-YPL100W_ZTW1 rna-NM_001183914.1_ZTW1 cds-NP_015225.1_ZTW1 99.4 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047502.1:346589-348079:+ gene-YPL100W_Sparadoxus rna-NM_001183914.1_Sparadoxus cds-NP_015225.1_Sparadoxus 90.5 100.0 Verified 1 1 1 False True False False False

Additional files