Gene name: ATG21
Reference locus (S288C): YPL100W
Gene biotype: protein_coding
Description: Autophagy-related protein 21; Phosphoinositide binding protein; required for vesicle formation in the cytoplasm-to-vacuole targeting (Cvt) pathway; binds both phosphatidylinositol (3,5)-bisphosphate and phosphatidylinositol 3-phosphate; WD-40 repeat protein
Top 10 interactors (score): ATG9 (0.989); ATG2 (0.98); ATG12 (0.977); VPS30 (0.973); ATG8 (0.966); ATG5 (0.966); ATG7 (0.96); ATG4 (0.957); SNX4 (0.951); ATG16 (0.936); ATG19 (0.933); ATG1 (0.928); ATG20 (0.927); ATG18 (0.917); VPS15 (0.916); ATG3 (0.913); VPS34 (0.908); ATG17 (0.871); ATG29 (0.859); ATG10 (0.842)
Homologues (species, bitscore): WIPI2 (Homo sapiens, 100.1); Wipi2 (Mus musculus, 97.4); wipi2 (Danio rerio, 99.4); wdr45b (Xenopus tropicalis, 66.2); Atg18a (Drosophila melanogaster, 100.1); atg-18 (Caenorhabditis elegans, 80.5); ATG18D (Arabidopsis thaliana, 73.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:339514-341004:+ | gene-YPL100W_AKU4011 | rna-NM_001183914.1_AKU4011 | cds-NP_015225.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:545267-546757:+ | gene-YPL100W_BG1 | rna-NM_001183914.1_BG1 | cds-NP_015225.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:365520-367010:+ | gene-YPL100W_Bruggeman | rna-NM_001183914.1_Bruggeman | cds-NP_015225.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:362984-364474:+ | gene-YPL100W_CAT1 | rna-NM_001183914.1_CAT1 | cds-NP_015225.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:343587-345077:+ | gene-YPL100W_CBS1585 | rna-NM_001183914.1_CBS1585 | cds-NP_015225.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:358259-359749:+ | gene-YPL100W_CBS436 | rna-NM_001183914.1_CBS436 | cds-NP_015225.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:348256-349746:+ | gene-YPL100W_CBS6412 | rna-NM_001183914.1_CBS6412 | cds-NP_015225.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:340223-341713:+ | gene-YPL100W_CBS6413 | rna-NM_001183914.1_CBS6413 | cds-NP_015225.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:361820-363310:+ | gene-YPL100W_CENPK1137D | rna-NM_001183914.1_CENPK1137D | cds-NP_015225.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:338206-339696:+ | gene-YPL100W_EthanolRed | rna-NM_001183914.1_EthanolRed | cds-NP_015225.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:345798-347288:+ | gene-YPL100W_FaliES1 | rna-NM_001183914.1_FaliES1 | cds-NP_015225.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:18530-20020:- | gene-YPL100W_JAY291 | rna-NM_001183914.1_JAY291 | cds-NP_015225.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:356758-358248:+ | gene-YPL100W_MUCL30387 | rna-NM_001183914.1_MUCL30387 | cds-NP_015225.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:581276-582766:+ | gene-YPL100W_MUCL30388 | rna-NM_001183914.1_MUCL30388 | cds-NP_015225.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:336916-338406:+ | gene-YPL100W_MUCL39482 | rna-NM_001183914.1_MUCL39482 | cds-NP_015225.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:394604-396094:+ | gene-YPL100W_MUCL42920 | rna-NM_001183914.1_MUCL42920 | cds-NP_015225.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:361855-363345:+ | gene-YPL100W_NCIM3186 | rna-NM_001183914.1_NCIM3186 | cds-NP_015225.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:343369-344859:+ | gene-YPL100W_NCYC1407 | rna-NM_001183914.1_NCYC1407 | cds-NP_015225.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:350859-352349:+ | gene-YPL100W_PE2H3 | rna-NM_001183914.1_PE2H3 | cds-NP_015225.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:350482-351972:+ | gene-YPL100W_PE2H4 | rna-NM_001183914.1_PE2H4 | cds-NP_015225.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:361872-363362:+ | gene-YPL100W_S288C | rna-NM_001183914.1_S288C | cds-NP_015225.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:10317-11807:- | gene-YPL100W_SA1 | rna-NM_001183914.1_SA1 | cds-NP_015225.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:345596-347086:+ | gene-YPL100W_ThermosaccDry | rna-NM_001183914.1_ThermosaccDry | cds-NP_015225.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:360570-362060:+ | gene-YPL100W_VR1 | rna-NM_001183914.1_VR1 | cds-NP_015225.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:344917-346407:+ | gene-YPL100W_ZTW1 | rna-NM_001183914.1_ZTW1 | cds-NP_015225.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:346589-348079:+ | gene-YPL100W_Sparadoxus | rna-NM_001183914.1_Sparadoxus | cds-NP_015225.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |