Gene name: ATG20
Reference locus (S288C): YDL113C
Gene biotype: protein_coding
Description: Autophagy-related protein 20; Sorting nexin family member; required for the cytoplasm-to-vacuole targeting (Cvt) pathway and for endosomal sorting; has a Phox homology domain that binds phosphatidylinositol-3-phosphate; interacts with Snx4p; potential Cdc28p substrate
Top 10 interactors (score): SNX4 (0.999); ATG11 (0.976); ATG26 (0.954); ATG21 (0.927); ATG9 (0.926); VPS35 (0.912); ATG1 (0.906); ATG15 (0.906); VPS29 (0.9); ATG33 (0.869); ATG23 (0.868); SNX41 (0.866); ATG18 (0.864); ATG19 (0.859); TLG2 (0.845); ATG17 (0.839); SNC1 (0.827); ATG29 (0.824); ATG8 (0.822); SNX3 (0.816)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:241258-243180:- | gene-YDL113C_AKU4011 | rna-NM_001180172.1_AKU4011 | cds-NP_010170.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:306771-308693:+ | gene-YDL113C_BG1 | rna-NM_001180172.1_BG1 | cds-NP_010170.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:258669-260591:- | gene-YDL113C_Bruggeman | rna-NM_001180172.1_Bruggeman | cds-NP_010170.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:255409-257331:- | gene-YDL113C_CAT1 | rna-NM_001180172.1_CAT1 | cds-NP_010170.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:239518-241440:- | gene-YDL113C_CBS1585 | rna-NM_001180172.1_CBS1585 | cds-NP_010170.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:256178-258100:- | gene-YDL113C_CBS436 | rna-NM_001180172.1_CBS436 | cds-NP_010170.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:237944-239866:- | gene-YDL113C_CBS6412 | rna-NM_001180172.1_CBS6412 | cds-NP_010170.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:257679-259601:- | gene-YDL113C_CBS6413 | rna-NM_001180172.1_CBS6413 | cds-NP_010170.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:255405-257327:- | gene-YDL113C_CENPK1137D | rna-NM_001180172.1_CENPK1137D | cds-NP_010170.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:252285-254207:- | gene-YDL113C_EthanolRed | rna-NM_001180172.1_EthanolRed | cds-NP_010170.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:258255-260177:- | gene-YDL113C_FaliES1 | rna-NM_001180172.1_FaliES1 | cds-NP_010170.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:28298-30220:- | gene-YDL113C_JAY291 | rna-NM_001180172.1_JAY291 | cds-NP_010170.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:256456-258378:- | gene-YDL113C_MUCL30387 | rna-NM_001180172.1_MUCL30387 | cds-NP_010170.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:247214-249136:- | gene-YDL113C_MUCL30388 | rna-NM_001180172.1_MUCL30388 | cds-NP_010170.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:240624-242546:- | gene-YDL113C_MUCL39482 | rna-NM_001180172.1_MUCL39482 | cds-NP_010170.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:162408-164330:- | gene-YDL113C_MUCL42920 | rna-NM_001180172.1_MUCL42920 | cds-NP_010170.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:256556-258478:- | gene-YDL113C_NCIM3186 | rna-NM_001180172.1_NCIM3186 | cds-NP_010170.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:240652-242574:- | gene-YDL113C_NCYC1407 | rna-NM_001180172.1_NCYC1407 | cds-NP_010170.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:247409-249331:- | gene-YDL113C_PE2H3 | rna-NM_001180172.1_PE2H3 | cds-NP_010170.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:247413-249335:- | gene-YDL113C_PE2H4 | rna-NM_001180172.1_PE2H4 | cds-NP_010170.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:256633-258555:- | gene-YDL113C_S288C | rna-NM_001180172.1_S288C | cds-NP_010170.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:176355-178277:+ | gene-YDL113C_SA1 | rna-NM_001180172.1_SA1 | cds-NP_010170.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:257766-259688:- | gene-YDL113C_ThermosaccDry | rna-NM_001180172.1_ThermosaccDry | cds-NP_010170.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:259871-261793:- | gene-YDL113C_VR1 | rna-NM_001180172.1_VR1 | cds-NP_010170.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:255693-257615:- | gene-YDL113C_ZTW1 | rna-NM_001180172.1_ZTW1 | cds-NP_010170.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:257848-259773:- | gene-YDL113C_Sparadoxus | rna-NM_001180172.1_Sparadoxus | cds-NP_010170.1_Sparadoxus | 91.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |