Gene name: ATG17
Reference locus (S288C): YLR423C
Gene biotype: protein_coding
Description: Autophagy-related protein 17; Scaffold protein responsible for phagophore assembly site organization; regulatory subunit of an autophagy-specific complex that includes Atg1p and Atg13p; stimulates Atg1p kinase activity; human ortholog RB1CC1/FIP200 interacts with p53, which inhibits autophagy in human cells
Top 10 interactors (score): ATG31 (0.999); ATG13 (0.999); ATG1 (0.999); ATG29 (0.999); ATG11 (0.997); ATG9 (0.994); ATG16 (0.946); ATG12 (0.918); ATG19 (0.916); SNX4 (0.906); ATG23 (0.875); ATG21 (0.871); COG4 (0.868); ATG8 (0.86); ATG20 (0.839); VPS30 (0.838); ATG22 (0.837); ATG5 (0.822); ATG14 (0.813); ATG2 (0.813)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:915466-916719:- | gene-YLR423C_AKU4011 | rna-NM_001182311.3_AKU4011 | cds-NP_013527.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:147631-148884:- | gene-YLR423C_BG1 | rna-NM_001182311.3_BG1 | cds-NP_013527.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:953769-955022:- | gene-YLR423C_Bruggeman | rna-NM_001182311.3_Bruggeman | cds-NP_013527.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:949316-950569:- | gene-YLR423C_CAT1 | rna-NM_001182311.3_CAT1 | cds-NP_013527.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:951063-952316:- | gene-YLR423C_CBS1585 | rna-NM_001182311.3_CBS1585 | cds-NP_013527.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:934720-935973:- | gene-YLR423C_CBS436 | rna-NM_001182311.3_CBS436 | cds-NP_013527.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:987103-988356:- | gene-YLR423C_CBS6412 | rna-NM_001182311.3_CBS6412 | cds-NP_013527.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:951355-952608:- | gene-YLR423C_CBS6413 | rna-NM_001182311.3_CBS6413 | cds-NP_013527.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:951117-952370:- | gene-YLR423C_CENPK1137D | rna-NM_001182311.3_CENPK1137D | cds-NP_013527.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:908346-909599:- | gene-YLR423C_EthanolRed | rna-NM_001182311.3_EthanolRed | cds-NP_013527.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:937827-939080:- | gene-YLR423C_FaliES1 | rna-NM_001182311.3_FaliES1 | cds-NP_013527.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:90460-91713:- | gene-YLR423C_JAY291 | rna-NM_001182311.3_JAY291 | cds-NP_013527.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:952631-953884:- | gene-YLR423C_MUCL30387 | rna-NM_001182311.3_MUCL30387 | cds-NP_013527.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:958734-959987:- | gene-YLR423C_MUCL30388 | rna-NM_001182311.3_MUCL30388 | cds-NP_013527.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:952283-953536:- | gene-YLR423C_MUCL39482 | rna-NM_001182311.3_MUCL39482 | cds-NP_013527.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:946940-948193:- | gene-YLR423C_MUCL42920 | rna-NM_001182311.3_MUCL42920 | cds-NP_013527.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:971891-973144:- | gene-YLR423C_NCIM3186 | rna-NM_001182311.3_NCIM3186 | cds-NP_013527.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:961462-962715:- | gene-YLR423C_NCYC1407 | rna-NM_001182311.3_NCYC1407 | cds-NP_013527.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:947841-949094:- | gene-YLR423C_PE2H3 | rna-NM_001182311.3_PE2H3 | cds-NP_013527.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:947585-948838:- | gene-YLR423C_PE2H4 | rna-NM_001182311.3_PE2H4 | cds-NP_013527.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:971917-973170:- | gene-YLR423C_S288C | rna-NM_001182311.3_S288C | cds-NP_013527.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:81503-82756:+ | gene-YLR423C_SA1 | rna-NM_001182311.3_SA1 | cds-NP_013527.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:940906-942159:- | gene-YLR423C_ThermosaccDry | rna-NM_001182311.3_ThermosaccDry | cds-NP_013527.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:953283-954536:- | gene-YLR423C_VR1 | rna-NM_001182311.3_VR1 | cds-NP_013527.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:277119-278372:- | gene-YLR423C_ZTW1 | rna-NM_001182311.3_ZTW1 | cds-NP_013527.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:926365-927618:- | gene-YLR423C_Sparadoxus | rna-NM_001182311.3_Sparadoxus | cds-NP_013527.3_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |