Gene name: ATG16
Reference locus (S288C): YMR159C
Gene biotype: protein_coding
Description: Conserved protein involved in autophagy; interacts with Atg12p-Atg5p conjugates to form Atg12p-Atg5p-Atg16p multimers, which binds to membranes and localizes to the pre-autophagosomal structure and are required for autophagy; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): ATG12 (0.999); ATG5 (0.999); ATG3 (0.992); VPS30 (0.961); ATG10 (0.959); ATG8 (0.952); ATG9 (0.951); ATG17 (0.946); ATG7 (0.945); ATG4 (0.942); ATG18 (0.939); ATG21 (0.936); ATG1 (0.922); ATP12 (0.902); ATG2 (0.896); ATG29 (0.861); ATG31 (0.849); VPS34 (0.848); ATG19 (0.839); ATG13 (0.813)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:613981-614433:- | gene-YMR159C_AKU4011 | rna-NM_001182663.1_AKU4011 | cds-NP_013882.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:58116-58568:+ | gene-YMR159C_BG1 | rna-NM_001182663.1_BG1 | cds-NP_013882.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:557156-557608:- | gene-YMR159C_Bruggeman | rna-NM_001182663.1_Bruggeman | cds-NP_013882.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:559363-559815:- | gene-YMR159C_CAT1 | rna-NM_001182663.1_CAT1 | cds-NP_013882.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:546906-547358:- | gene-YMR159C_CBS1585 | rna-NM_001182663.1_CBS1585 | cds-NP_013882.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:550773-551225:- | gene-YMR159C_CBS436 | rna-NM_001182663.1_CBS436 | cds-NP_013882.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:659523-659975:- | gene-YMR159C_CBS6412 | rna-NM_001182663.1_CBS6412 | cds-NP_013882.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:545456-545908:- | gene-YMR159C_CBS6413 | rna-NM_001182663.1_CBS6413 | cds-NP_013882.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:568979-569431:- | gene-YMR159C_CENPK1137D | rna-NM_001182663.1_CENPK1137D | cds-NP_013882.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:545071-545523:- | gene-YMR159C_EthanolRed | rna-NM_001182663.1_EthanolRed | cds-NP_013882.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:552070-552522:- | gene-YMR159C_FaliES1 | rna-NM_001182663.1_FaliES1 | cds-NP_013882.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000292.1:25011-25463:+ | gene-YMR159C_JAY291 | rna-NM_001182663.1_JAY291 | cds-NP_013882.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:551866-552318:- | gene-YMR159C_MUCL30387 | rna-NM_001182663.1_MUCL30387 | cds-NP_013882.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:557390-557842:- | gene-YMR159C_MUCL30388 | rna-NM_001182663.1_MUCL30388 | cds-NP_013882.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:547592-548044:- | gene-YMR159C_MUCL39482 | rna-NM_001182663.1_MUCL39482 | cds-NP_013882.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:554462-554914:- | gene-YMR159C_MUCL42920 | rna-NM_001182663.1_MUCL42920 | cds-NP_013882.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:574430-574882:- | gene-YMR159C_NCIM3186 | rna-NM_001182663.1_NCIM3186 | cds-NP_013882.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:547294-547746:- | gene-YMR159C_NCYC1407 | rna-NM_001182663.1_NCYC1407 | cds-NP_013882.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:557672-558124:- | gene-YMR159C_PE2H3 | rna-NM_001182663.1_PE2H3 | cds-NP_013882.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:558122-558574:- | gene-YMR159C_PE2H4 | rna-NM_001182663.1_PE2H4 | cds-NP_013882.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:574476-574928:- | gene-YMR159C_S288C | rna-NM_001182663.1_S288C | cds-NP_013882.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:231507-231959:+ | gene-YMR159C_SA1 | rna-NM_001182663.1_SA1 | cds-NP_013882.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:547718-548170:- | gene-YMR159C_ThermosaccDry | rna-NM_001182663.1_ThermosaccDry | cds-NP_013882.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:560179-560631:- | gene-YMR159C_VR1 | rna-NM_001182663.1_VR1 | cds-NP_013882.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:522611-523063:- | gene-YMR159C_ZTW1 | rna-NM_001182663.1_ZTW1 | cds-NP_013882.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:560151-560603:- | gene-YMR159C_Sparadoxus | rna-NM_001182663.1_Sparadoxus | cds-NP_013882.1_Sparadoxus | 88.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |