Gene name: ATG13
Reference locus (S288C): YPR185W
Gene biotype: protein_coding
Description: Autophagy-related protein 13; Regulatory subunit of the Atg1p signaling complex; stimulates Atg1p kinase activity; required for vesicle formation during autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; contains a HORMA domain required for autophagy and for recruitment of the phosphatidylinositol 3-kinase complex subunit Atg14p to the pre-autophagosomal structure; Belongs to the ATG13 family. Fungi subfamily
Top 10 interactors (score): ATG9 (0.999); ATG31 (0.999); ATG1 (0.999); ATG17 (0.999); ATG29 (0.999); VAC8 (0.998); ATG11 (0.998); VPS30 (0.988); VPS34 (0.981); VPS15 (0.974); ATG7 (0.973); ATG2 (0.964); ATG14 (0.962); ATG3 (0.96); ATG4 (0.957); ATG8 (0.955); TOR1 (0.954); ATG18 (0.951); ATG23 (0.936); ATG5 (0.935)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:861502-863718:+ | gene-YPR185W_AKU4011 | rna-NM_001184282.1_AKU4011 | cds-NP_015511.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:34003-36216:- | gene-YPR185W_BG1 | rna-NM_001184282.1_BG1 | cds-NP_015511.1_BG1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:942775-944991:+ | gene-YPR185W_Bruggeman | rna-NM_001184282.1_Bruggeman | cds-NP_015511.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:984834-987047:+ | gene-YPR185W_CAT1 | rna-NM_001184282.1_CAT1 | cds-NP_015511.1_CAT1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:866302-868518:+ | gene-YPR185W_CBS1585 | rna-NM_001184282.1_CBS1585 | cds-NP_015511.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:879840-882053:+ | gene-YPR185W_CBS436 | rna-NM_001184282.1_CBS436 | cds-NP_015511.1_CBS436 | 99.3 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:868086-870302:+ | gene-YPR185W_CBS6412 | rna-NM_001184282.1_CBS6412 | cds-NP_015511.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:863231-865447:+ | gene-YPR185W_CBS6413 | rna-NM_001184282.1_CBS6413 | cds-NP_015511.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:907294-909507:+ | gene-YPR185W_CENPK1137D | rna-NM_001184282.1_CENPK1137D | cds-NP_015511.1_CENPK1137D | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1183253-1185472:+ | gene-YPR185W_EthanolRed | rna-NM_001184282.1_EthanolRed | cds-NP_015511.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:863326-865545:+ | gene-YPR185W_FaliES1 | rna-NM_001184282.1_FaliES1 | cds-NP_015511.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:50625-52838:+ | gene-YPR185W_JAY291 | rna-NM_001184282.1_JAY291 | cds-NP_015511.1_JAY291 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:910008-912221:+ | gene-YPR185W_MUCL30387 | rna-NM_001184282.1_MUCL30387 | cds-NP_015511.1_MUCL30387 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:884139-886355:+ | gene-YPR185W_MUCL30388 | rna-NM_001184282.1_MUCL30388 | cds-NP_015511.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:858503-860719:+ | gene-YPR185W_MUCL39482 | rna-NM_001184282.1_MUCL39482 | cds-NP_015511.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:922968-925181:+ | gene-YPR185W_MUCL42920 | rna-NM_001184282.1_MUCL42920 | cds-NP_015511.1_MUCL42920 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:907201-909417:+ | gene-YPR185W_NCIM3186 | rna-NM_001184282.1_NCIM3186 | cds-NP_015511.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:866865-869081:+ | gene-YPR185W_NCYC1407 | rna-NM_001184282.1_NCYC1407 | cds-NP_015511.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:879149-881362:+ | gene-YPR185W_PE2H3 | rna-NM_001184282.1_PE2H3 | cds-NP_015511.1_PE2H3 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:878797-881010:+ | gene-YPR185W_PE2H4 | rna-NM_001184282.1_PE2H4 | cds-NP_015511.1_PE2H4 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:907218-909434:+ | gene-YPR185W_S288C | rna-NM_001184282.1_S288C | cds-NP_015511.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:16379-18592:- | gene-YPR185W_SA1 | rna-NM_001184282.1_SA1 | cds-NP_015511.1_SA1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:863014-865233:+ | gene-YPR185W_ThermosaccDry | rna-NM_001184282.1_ThermosaccDry | cds-NP_015511.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:890804-893017:+ | gene-YPR185W_VR1 | rna-NM_001184282.1_VR1 | cds-NP_015511.1_VR1 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:865559-867778:+ | gene-YPR185W_ZTW1 | rna-NM_001184282.1_ZTW1 | cds-NP_015511.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:867597-869819:+ | gene-YPR185W_Sparadoxus | rna-NM_001184282.1_Sparadoxus | cds-NP_015511.1_Sparadoxus | 89.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |