Gene name: ATG10
Reference locus (S288C): YLL042C
Gene biotype: protein_coding
Description: Ubiquitin-like-conjugating enzyme ATG10; Conserved E2-like conjugating enzyme; mediates formation of the Atg12p-Atg5p conjugate, which is a critical step in autophagy; Belongs to the ATG10 family
Top 10 interactors (score): ATG7 (0.999); ATG12 (0.998); ATG3 (0.962); ATG16 (0.959); ATG4 (0.958); ATG5 (0.951); ATG8 (0.943); ATG14 (0.932); ATG1 (0.908); VPS30 (0.904); ATP12 (0.904); ATG18 (0.899); ATG29 (0.896); ATG9 (0.895); ATG19 (0.857); ATG21 (0.842); ATG15 (0.81); ATG23 (0.792); ATG13 (0.776); SNX4 (0.758)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:39249-39752:- | gene-YLL042C_AKU4011 | rna-NM_001181862.1_AKU4011 | cds-NP_013058.1_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:3201-3704:- | gene-YLL042C_BG1 | rna-NM_001181862.1_BG1 | cds-NP_013058.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:48588-49091:- | gene-YLL042C_Bruggeman | rna-NM_001181862.1_Bruggeman | cds-NP_013058.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:50120-50623:- | gene-YLL042C_CAT1 | rna-NM_001181862.1_CAT1 | cds-NP_013058.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:47155-47658:- | gene-YLL042C_CBS1585 | rna-NM_001181862.1_CBS1585 | cds-NP_013058.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:37144-37647:- | gene-YLL042C_CBS436 | rna-NM_001181862.1_CBS436 | cds-NP_013058.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:46818-47321:- | gene-YLL042C_CBS6412 | rna-NM_001181862.1_CBS6412 | cds-NP_013058.1_CBS6412 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:46944-47447:- | gene-YLL042C_CBS6413 | rna-NM_001181862.1_CBS6413 | cds-NP_013058.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:37067-37570:- | gene-YLL042C_CENPK1137D | rna-NM_001181862.1_CENPK1137D | cds-NP_013058.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:39869-40372:- | gene-YLL042C_EthanolRed | rna-NM_001181862.1_EthanolRed | cds-NP_013058.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:39182-39685:- | gene-YLL042C_FaliES1 | rna-NM_001181862.1_FaliES1 | cds-NP_013058.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000145.1:4189-4692:- | gene-YLL042C_JAY291 | rna-NM_001181862.1_JAY291 | cds-NP_013058.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:46888-47391:- | gene-YLL042C_MUCL30387 | rna-NM_001181862.1_MUCL30387 | cds-NP_013058.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:50882-51385:- | gene-YLL042C_MUCL30388 | rna-NM_001181862.1_MUCL30388 | cds-NP_013058.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:47158-47661:- | gene-YLL042C_MUCL39482 | rna-NM_001181862.1_MUCL39482 | cds-NP_013058.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:47461-47964:- | gene-YLL042C_MUCL42920 | rna-NM_001181862.1_MUCL42920 | cds-NP_013058.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:52061-52564:- | gene-YLL042C_NCIM3186 | rna-NM_001181862.1_NCIM3186 | cds-NP_013058.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:39024-39527:- | gene-YLL042C_NCYC1407 | rna-NM_001181862.1_NCYC1407 | cds-NP_013058.1_NCYC1407 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:45705-46208:- | gene-YLL042C_PE2H3 | rna-NM_001181862.1_PE2H3 | cds-NP_013058.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:45513-46016:- | gene-YLL042C_PE2H4 | rna-NM_001181862.1_PE2H4 | cds-NP_013058.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:52087-52590:- | gene-YLL042C_S288C | rna-NM_001181862.1_S288C | cds-NP_013058.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:45380-45883:- | gene-YLL042C_SA1 | rna-NM_001181862.1_SA1 | cds-NP_013058.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:39688-40191:- | gene-YLL042C_ThermosaccDry | rna-NM_001181862.1_ThermosaccDry | cds-NP_013058.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:53281-53784:- | gene-YLL042C_VR1 | rna-NM_001181862.1_VR1 | cds-NP_013058.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:39014-39517:- | gene-YLL042C_ZTW1 | rna-NM_001181862.1_ZTW1 | cds-NP_013058.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:47613-48116:- | gene-YLL042C_Sparadoxus | rna-NM_001181862.1_Sparadoxus | cds-NP_013058.1_Sparadoxus | 86.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |