Gene name: ATG1
Reference locus (S288C): YGL180W
Gene biotype: protein_coding
Description: Serine/threonine-protein kinase ATG1; Protein serine/threonine kinase; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; during autophagy forms a complex with Atg13p and Atg17p; essential for cell cycle progression from G2/M to G1 under nitrogen starvation
Top 10 interactors (score): ATG13 (0.999); ATG11 (0.999); VPS30 (0.999); TOR1 (0.999); ATG9 (0.999); ATG2 (0.999); ATG17 (0.999); VPS34 (0.999); ATG4 (0.999); ATG8 (0.999); ATG18 (0.998); ATG29 (0.998); ATG7 (0.998); TOR2 (0.998); VPS15 (0.998); ATG5 (0.996); ATG12 (0.995); ATG3 (0.995); ATG31 (0.992); ATG14 (0.983)
Homologues (species, bitscore): ULK3 (Homo sapiens, 201.1); Ulk3 (Mus musculus, 202.2); ulk2 (Danio rerio, 192.2); ulk3 (Xenopus tropicalis, 192.6); Atg1 (Drosophila melanogaster, 176.8); unc-51 (Caenorhabditis elegans, 187.6); AT2G37840 (Arabidopsis thaliana, 219.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:162611-165304:+ | gene-YGL180W_AKU4011 | rna-NM_001181045.1_AKU4011 | cds-NP_011335.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:245133-247826:- | gene-YGL180W_BG1 | rna-NM_001181045.1_BG1 | cds-NP_011335.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:164832-167525:+ | gene-YGL180W_Bruggeman | rna-NM_001181045.1_Bruggeman | cds-NP_011335.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:160698-163391:+ | gene-YGL180W_CAT1 | rna-NM_001181045.1_CAT1 | cds-NP_011335.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:165756-168449:+ | gene-YGL180W_CBS1585 | rna-NM_001181045.1_CBS1585 | cds-NP_011335.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:160728-163421:+ | gene-YGL180W_CBS436 | rna-NM_001181045.1_CBS436 | cds-NP_011335.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:152536-155229:+ | gene-YGL180W_CBS6412 | rna-NM_001181045.1_CBS6412 | cds-NP_011335.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:160065-162758:+ | gene-YGL180W_CBS6413 | rna-NM_001181045.1_CBS6413 | cds-NP_011335.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:160256-162949:+ | gene-YGL180W_CENPK1137D | rna-NM_001181045.1_CENPK1137D | cds-NP_011335.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:152429-155122:+ | gene-YGL180W_EthanolRed | rna-NM_001181045.1_EthanolRed | cds-NP_011335.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:153676-156369:+ | gene-YGL180W_FaliES1 | rna-NM_001181045.1_FaliES1 | cds-NP_011335.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:3923-6616:+ | gene-YGL180W_JAY291 | rna-NM_001181045.1_JAY291 | cds-NP_011335.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:162075-164768:+ | gene-YGL180W_MUCL30387 | rna-NM_001181045.1_MUCL30387 | cds-NP_011335.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:165167-167860:+ | gene-YGL180W_MUCL30388 | rna-NM_001181045.1_MUCL30388 | cds-NP_011335.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:162760-165453:+ | gene-YGL180W_MUCL39482 | rna-NM_001181045.1_MUCL39482 | cds-NP_011335.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:165382-168075:+ | gene-YGL180W_MUCL42920 | rna-NM_001181045.1_MUCL42920 | cds-NP_011335.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:160065-162758:+ | gene-YGL180W_NCIM3186 | rna-NM_001181045.1_NCIM3186 | cds-NP_011335.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:154247-156940:+ | gene-YGL180W_NCYC1407 | rna-NM_001181045.1_NCYC1407 | cds-NP_011335.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:156222-158915:+ | gene-YGL180W_PE2H3 | rna-NM_001181045.1_PE2H3 | cds-NP_011335.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:155770-158463:+ | gene-YGL180W_PE2H4 | rna-NM_001181045.1_PE2H4 | cds-NP_011335.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:160065-162758:+ | gene-YGL180W_S288C | rna-NM_001181045.1_S288C | cds-NP_011335.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000067.1:19823-22516:+ | gene-YGL180W_SA1 | rna-NM_001181045.1_SA1 | cds-NP_011335.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:153906-156599:+ | gene-YGL180W_ThermosaccDry | rna-NM_001181045.1_ThermosaccDry | cds-NP_011335.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:161124-163817:+ | gene-YGL180W_VR1 | rna-NM_001181045.1_VR1 | cds-NP_011335.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:152342-155035:+ | gene-YGL180W_ZTW1 | rna-NM_001181045.1_ZTW1 | cds-NP_011335.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:159201-161894:+ | gene-YGL180W_Sparadoxus | rna-NM_001181045.1_Sparadoxus | cds-NP_011335.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |