Gene name: ASP3-4
Reference locus (S288C): YLR160C
Gene biotype: protein_coding
Description: Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; likely arose in via horizontal gene transfer from the wine yeast Wickerhamomyces anomalus or a close relative; reference strain S288C has four copies of ASP3; ASP3-4 has a paralog, ASP3-2, that arose from a segmental duplication; Belongs to the asparaginase 1 family
Top 10 interactors (score): YLR156W (0.949); ASP3-3 (0.873); ASP3-2 (0.873); ASP3-1 (0.872); GLN3 (0.78); ENA2 (0.76); ENA1 (0.713); ENA5 (0.71); CUP1-2 (0.698); RNH203 (0.618); CUP1-1 (0.616); MAL13 (0.616); HXT9 (0.614); HXT11 (0.611); DAL7 (0.598); REE1 (0.593); IMA4 (0.576); VTH1 (0.573); YLR157W-E (0.572); YEL075W-A (0.567)
Homologues (species, bitscore): Aspg (Mus musculus, 52.4); CG8526 (Drosophila melanogaster, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000096.1:7812-8900:- | gene-YLR160C_BG1 | rna-NM_001182047.1_BG1 | cds-NP_013261.1_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:480183-481271:- | gene-YLR160C_CAT1 | rna-NM_001182047.1_CAT1 | cds-NP_013261.1_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:472697-473785:- | gene-YLR160C_PE2H3 | rna-NM_001182047.1_PE2H3 | cds-NP_013261.1_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:472440-473528:- | gene-YLR160C_PE2H4 | rna-NM_001182047.1_PE2H4 | cds-NP_013261.1_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:486201-487289:- | gene-YLR160C_S288C | rna-NM_001182047.1_S288C | cds-NP_013261.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000115.1:10371-11459:- | gene-YLR160C_SA1 | rna-NM_001182047.1_SA1 | cds-NP_013261.1_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:482593-483681:- | gene-YLR160C_VR1 | rna-NM_001182047.1_VR1 | cds-NP_013261.1_VR1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |