Gene name: ASM4
Reference locus (S288C): YDL088C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of nuclear pore complex (NPC); contributes directly to nucleocytoplasmic transport; induces membrane tubulation, which may contribute to nuclear pore assembly; ASM4 has a paralog, NUP53, that arose from the whole genome duplication
Top 10 interactors (score): NUP53 (0.999); NUP170 (0.998); NUP42 (0.996); POM152 (0.994); NUP157 (0.994); NUP57 (0.992); NUP116 (0.992); NUP188 (0.991); NSP1 (0.991); POM34 (0.989); NUP159 (0.989); NUP100 (0.988); NUP192 (0.987); NUP49 (0.983); NUP145 (0.981); NIC96 (0.977); NUP1 (0.975); NDC1 (0.975); NUP60 (0.973); GLE2 (0.969)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:283030-284616:- | gene-YDL088C_AKU4011 | rna-NM_001180147.1_AKU4011 | cds-NP_010195.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:265327-266913:+ | gene-YDL088C_BG1 | rna-NM_001180147.1_BG1 | cds-NP_010195.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:300703-302289:- | gene-YDL088C_Bruggeman | rna-NM_001180147.1_Bruggeman | cds-NP_010195.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:297191-298777:- | gene-YDL088C_CAT1 | rna-NM_001180147.1_CAT1 | cds-NP_010195.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:281302-282888:- | gene-YDL088C_CBS1585 | rna-NM_001180147.1_CBS1585 | cds-NP_010195.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:297969-299555:- | gene-YDL088C_CBS436 | rna-NM_001180147.1_CBS436 | cds-NP_010195.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:279730-281316:- | gene-YDL088C_CBS6412 | rna-NM_001180147.1_CBS6412 | cds-NP_010195.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:299355-300941:- | gene-YDL088C_CBS6413 | rna-NM_001180147.1_CBS6413 | cds-NP_010195.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:297240-298826:- | gene-YDL088C_CENPK1137D | rna-NM_001180147.1_CENPK1137D | cds-NP_010195.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:294065-295651:- | gene-YDL088C_EthanolRed | rna-NM_001180147.1_EthanolRed | cds-NP_010195.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:300037-301623:- | gene-YDL088C_FaliES1 | rna-NM_001180147.1_FaliES1 | cds-NP_010195.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:70088-71674:- | gene-YDL088C_JAY291 | rna-NM_001180147.1_JAY291 | cds-NP_010195.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:298217-299803:- | gene-YDL088C_MUCL30387 | rna-NM_001180147.1_MUCL30387 | cds-NP_010195.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:289243-290829:- | gene-YDL088C_MUCL30388 | rna-NM_001180147.1_MUCL30388 | cds-NP_010195.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:282407-283993:- | gene-YDL088C_MUCL39482 | rna-NM_001180147.1_MUCL39482 | cds-NP_010195.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:204418-206007:- | gene-YDL088C_MUCL42920 | rna-NM_001180147.1_MUCL42920 | cds-NP_010195.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:298340-299926:- | gene-YDL088C_NCIM3186 | rna-NM_001180147.1_NCIM3186 | cds-NP_010195.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:282422-284008:- | gene-YDL088C_NCYC1407 | rna-NM_001180147.1_NCYC1407 | cds-NP_010195.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:289205-290791:- | gene-YDL088C_PE2H3 | rna-NM_001180147.1_PE2H3 | cds-NP_010195.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:289204-290790:- | gene-YDL088C_PE2H4 | rna-NM_001180147.1_PE2H4 | cds-NP_010195.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:298417-300003:- | gene-YDL088C_S288C | rna-NM_001180147.1_S288C | cds-NP_010195.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:134916-136502:+ | gene-YDL088C_SA1 | rna-NM_001180147.1_SA1 | cds-NP_010195.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:299548-301134:- | gene-YDL088C_ThermosaccDry | rna-NM_001180147.1_ThermosaccDry | cds-NP_010195.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:301622-303208:- | gene-YDL088C_VR1 | rna-NM_001180147.1_VR1 | cds-NP_010195.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:297467-299053:- | gene-YDL088C_ZTW1 | rna-NM_001180147.1_ZTW1 | cds-NP_010195.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:299535-301118:- | gene-YDL088C_Sparadoxus | rna-NM_001180147.1_Sparadoxus | cds-NP_010195.1_Sparadoxus | 86.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |