ASM4 (YDL088C)


Gene profile

Gene name: ASM4
Reference locus (S288C): YDL088C
Gene biotype: protein_coding

Description: FG-nucleoporin component of central core of nuclear pore complex (NPC); contributes directly to nucleocytoplasmic transport; induces membrane tubulation, which may contribute to nuclear pore assembly; ASM4 has a paralog, NUP53, that arose from the whole genome duplication

Top 10 interactors (score): NUP53 (0.999); NUP170 (0.998); NUP42 (0.996); POM152 (0.994); NUP157 (0.994); NUP57 (0.992); NUP116 (0.992); NUP188 (0.991); NSP1 (0.991); POM34 (0.989); NUP159 (0.989); NUP100 (0.988); NUP192 (0.987); NUP49 (0.983); NUP145 (0.981); NIC96 (0.977); NUP1 (0.975); NDC1 (0.975); NUP60 (0.973); GLE2 (0.969)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:283030-284616:- gene-YDL088C_AKU4011 rna-NM_001180147.1_AKU4011 cds-NP_010195.1_AKU4011 99.6 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000102.1:265327-266913:+ gene-YDL088C_BG1 rna-NM_001180147.1_BG1 cds-NP_010195.1_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:300703-302289:- gene-YDL088C_Bruggeman rna-NM_001180147.1_Bruggeman cds-NP_010195.1_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:297191-298777:- gene-YDL088C_CAT1 rna-NM_001180147.1_CAT1 cds-NP_010195.1_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:281302-282888:- gene-YDL088C_CBS1585 rna-NM_001180147.1_CBS1585 cds-NP_010195.1_CBS1585 99.6 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:297969-299555:- gene-YDL088C_CBS436 rna-NM_001180147.1_CBS436 cds-NP_010195.1_CBS436 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:279730-281316:- gene-YDL088C_CBS6412 rna-NM_001180147.1_CBS6412 cds-NP_010195.1_CBS6412 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:299355-300941:- gene-YDL088C_CBS6413 rna-NM_001180147.1_CBS6413 cds-NP_010195.1_CBS6413 99.6 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:297240-298826:- gene-YDL088C_CENPK1137D rna-NM_001180147.1_CENPK1137D cds-NP_010195.1_CENPK1137D 99.6 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:294065-295651:- gene-YDL088C_EthanolRed rna-NM_001180147.1_EthanolRed cds-NP_010195.1_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:300037-301623:- gene-YDL088C_FaliES1 rna-NM_001180147.1_FaliES1 cds-NP_010195.1_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000010.1:70088-71674:- gene-YDL088C_JAY291 rna-NM_001180147.1_JAY291 cds-NP_010195.1_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:298217-299803:- gene-YDL088C_MUCL30387 rna-NM_001180147.1_MUCL30387 cds-NP_010195.1_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:289243-290829:- gene-YDL088C_MUCL30388 rna-NM_001180147.1_MUCL30388 cds-NP_010195.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:282407-283993:- gene-YDL088C_MUCL39482 rna-NM_001180147.1_MUCL39482 cds-NP_010195.1_MUCL39482 99.6 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:204418-206007:- gene-YDL088C_MUCL42920 rna-NM_001180147.1_MUCL42920 cds-NP_010195.1_MUCL42920 99.4 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:298340-299926:- gene-YDL088C_NCIM3186 rna-NM_001180147.1_NCIM3186 cds-NP_010195.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:282422-284008:- gene-YDL088C_NCYC1407 rna-NM_001180147.1_NCYC1407 cds-NP_010195.1_NCYC1407 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:289205-290791:- gene-YDL088C_PE2H3 rna-NM_001180147.1_PE2H3 cds-NP_010195.1_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:289204-290790:- gene-YDL088C_PE2H4 rna-NM_001180147.1_PE2H4 cds-NP_010195.1_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:298417-300003:- gene-YDL088C_S288C rna-NM_001180147.1_S288C cds-NP_010195.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000010.1:134916-136502:+ gene-YDL088C_SA1 rna-NM_001180147.1_SA1 cds-NP_010195.1_SA1 99.3 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:299548-301134:- gene-YDL088C_ThermosaccDry rna-NM_001180147.1_ThermosaccDry cds-NP_010195.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:301622-303208:- gene-YDL088C_VR1 rna-NM_001180147.1_VR1 cds-NP_010195.1_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:297467-299053:- gene-YDL088C_ZTW1 rna-NM_001180147.1_ZTW1 cds-NP_010195.1_ZTW1 99.6 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:299535-301118:- gene-YDL088C_Sparadoxus rna-NM_001180147.1_Sparadoxus cds-NP_010195.1_Sparadoxus 86.0 99.6 Verified 1 1 1 False True False False False

Additional files