Gene name: ARX1
Reference locus (S288C): YDR101C
Gene biotype: protein_coding
Description: Probable metalloprotease ARX1; Nuclear export factor for the ribosomal pre-60S subunit; shuttling factor which directly binds FG rich nucleoporins and facilities translocation through the nuclear pore complex; interacts directly with Alb1p; responsible for Tif6p recycling defects in the absence of Rei1; associated with the ribosomal export complex
Top 10 interactors (score): RPL3 (0.999); BRX1 (0.999); RPL20A (0.999); PUF6 (0.999); DBP3 (0.999); ECM1 (0.999); CIC1 (0.999); TIF6 (0.999); NOG1 (0.999); RPP0 (0.999); RIX1 (0.999); RSA4 (0.999); RLP7 (0.999); MDN1 (0.999); RPL2A (0.999); RLI1 (0.999); SDA1 (0.999); BUD20 (0.999); RPL4A (0.999); NMD3 (0.999)
Homologues (species, bitscore): PA2G4 (Homo sapiens, 79.7); Pa2g4 (Mus musculus, 80.5); pa2g4a (Danio rerio, 84.7); pa2g4 (Xenopus tropicalis, 73.2); CG10576 (Drosophila melanogaster, 73.2); W08E12.7 (Caenorhabditis elegans, 62.8); EBP1 (Arabidopsis thaliana, 81.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:626968-628749:- | gene-YDR101C_AKU4011 | rna-NM_001180409.1_AKU4011 | cds-NP_010386.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:496169-497950:+ | gene-YDR101C_BG1 | rna-NM_001180409.1_BG1 | cds-NP_010386.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:659055-660836:- | gene-YDR101C_Bruggeman | rna-NM_001180409.1_Bruggeman | cds-NP_010386.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:644928-646709:- | gene-YDR101C_CAT1 | rna-NM_001180409.1_CAT1 | cds-NP_010386.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:617987-619768:- | gene-YDR101C_CBS1585 | rna-NM_001180409.1_CBS1585 | cds-NP_010386.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:643386-645167:- | gene-YDR101C_CBS436 | rna-NM_001180409.1_CBS436 | cds-NP_010386.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:614402-616183:- | gene-YDR101C_CBS6412 | rna-NM_001180409.1_CBS6412 | cds-NP_010386.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:642933-644714:- | gene-YDR101C_CBS6413 | rna-NM_001180409.1_CBS6413 | cds-NP_010386.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:648415-650196:- | gene-YDR101C_CENPK1137D | rna-NM_001180409.1_CENPK1137D | cds-NP_010386.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:628753-630534:- | gene-YDR101C_EthanolRed | rna-NM_001180409.1_EthanolRed | cds-NP_010386.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:635547-637328:- | gene-YDR101C_FaliES1 | rna-NM_001180409.1_FaliES1 | cds-NP_010386.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000125.1:4215-5996:- | gene-YDR101C_JAY291 | rna-NM_001180409.1_JAY291 | cds-NP_010386.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:644961-646742:- | gene-YDR101C_MUCL30387 | rna-NM_001180409.1_MUCL30387 | cds-NP_010386.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:633985-635766:- | gene-YDR101C_MUCL30388 | rna-NM_001180409.1_MUCL30388 | cds-NP_010386.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:619357-621138:- | gene-YDR101C_MUCL39482 | rna-NM_001180409.1_MUCL39482 | cds-NP_010386.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:557302-559083:- | gene-YDR101C_MUCL42920 | rna-NM_001180409.1_MUCL42920 | cds-NP_010386.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:655609-657390:- | gene-YDR101C_NCIM3186 | rna-NM_001180409.1_NCIM3186 | cds-NP_010386.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:618268-620049:- | gene-YDR101C_NCYC1407 | rna-NM_001180409.1_NCYC1407 | cds-NP_010386.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:638082-639863:- | gene-YDR101C_PE2H3 | rna-NM_001180409.1_PE2H3 | cds-NP_010386.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:637387-639168:- | gene-YDR101C_PE2H4 | rna-NM_001180409.1_PE2H4 | cds-NP_010386.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:655686-657467:- | gene-YDR101C_S288C | rna-NM_001180409.1_S288C | cds-NP_010386.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:4296-6077:- | gene-YDR101C_SA1 | rna-NM_001180409.1_SA1 | cds-NP_010386.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:635076-636857:- | gene-YDR101C_ThermosaccDry | rna-NM_001180409.1_ThermosaccDry | cds-NP_010386.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:647992-649773:- | gene-YDR101C_VR1 | rna-NM_001180409.1_VR1 | cds-NP_010386.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:632660-634441:- | gene-YDR101C_ZTW1 | rna-NM_001180409.1_ZTW1 | cds-NP_010386.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:637327-639108:- | gene-YDR101C_Sparadoxus | rna-NM_001180409.1_Sparadoxus | cds-NP_010386.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |