ARP8 (YOR141C)


Gene profile

Gene name: ARP8
Reference locus (S288C): YOR141C
Gene biotype: protein_coding

Description: Actin-like protein ARP8; Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; has mRNA binding activity

Top 10 interactors (score): INO80 (0.999); ARP5 (0.999); ACT1 (0.997); ARP4 (0.996); NHP10 (0.994); RVB2 (0.994); IES3 (0.986); RVB1 (0.986); IES6 (0.986); SWR1 (0.983); IES1 (0.979); IES4 (0.977); IES5 (0.968); IES2 (0.948); ARP6 (0.942); TAF14 (0.935); YAF9 (0.869); VPS71 (0.861); VPS72 (0.841); HTZ1 (0.829)

Homologues (species, bitscore): ACTR8 (Homo sapiens, 202.2); Actr8 (Mus musculus, 200.3); actr8 (Danio rerio, 193.4); actr2 (Xenopus tropicalis, 50.1); Arp8 (Drosophila melanogaster, 157.5); arx-2 (Caenorhabditis elegans, 55.1); ARP9 (Arabidopsis thaliana, 105.1)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005309.1:593396-596041:- gene-YOR141C_AKU4011 rna-NM_001183560.1_AKU4011 cds-NP_014784.1_AKU4011 99.8 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000171.1:2568-5213:+ gene-YOR141C_BG1 rna-NM_001183560.1_BG1 cds-NP_014784.1_BG1 99.4 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:577556-580201:- gene-YOR141C_Bruggeman rna-NM_001183560.1_Bruggeman cds-NP_014784.1_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005533.1:577576-580221:- gene-YOR141C_CAT1 rna-NM_001183560.1_CAT1 cds-NP_014784.1_CAT1 99.4 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005373.1:569574-572219:- gene-YOR141C_CBS1585 rna-NM_001183560.1_CBS1585 cds-NP_014784.1_CBS1585 99.7 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005357.1:574280-576925:- gene-YOR141C_CBS436 rna-NM_001183560.1_CBS436 cds-NP_014784.1_CBS436 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005341.1:567063-569708:- gene-YOR141C_CBS6412 rna-NM_001183560.1_CBS6412 cds-NP_014784.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005325.1:575857-578502:- gene-YOR141C_CBS6413 rna-NM_001183560.1_CBS6413 cds-NP_014784.1_CBS6413 99.8 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001536.1:589693-592338:- gene-YOR141C_CENPK1137D rna-NM_001183560.1_CENPK1137D cds-NP_014784.1_CENPK1137D 99.4 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005485.1:569708-572353:- gene-YOR141C_EthanolRed rna-NM_001183560.1_EthanolRed cds-NP_014784.1_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005549.1:574561-577206:- gene-YOR141C_FaliES1 rna-NM_001183560.1_FaliES1 cds-NP_014784.1_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000070.1:66344-68989:+ gene-YOR141C_JAY291 rna-NM_001183560.1_JAY291 cds-NP_014784.1_JAY291 99.4 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005421.1:582113-584758:- gene-YOR141C_MUCL30387 rna-NM_001183560.1_MUCL30387 cds-NP_014784.1_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005453.1:588195-590840:- gene-YOR141C_MUCL30388 rna-NM_001183560.1_MUCL30388 cds-NP_014784.1_MUCL30388 99.4 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005293.1:577648-580293:- gene-YOR141C_MUCL39482 rna-NM_001183560.1_MUCL39482 cds-NP_014784.1_MUCL39482 99.7 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005437.1:593248-595893:- gene-YOR141C_MUCL42920 rna-NM_001183560.1_MUCL42920 cds-NP_014784.1_MUCL42920 99.4 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:589831-592476:- gene-YOR141C_NCIM3186 rna-NM_001183560.1_NCIM3186 cds-NP_014784.1_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005277.1:583916-586561:- gene-YOR141C_NCYC1407 rna-NM_001183560.1_NCYC1407 cds-NP_014784.1_NCYC1407 99.7 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:582422-585067:- gene-YOR141C_PE2H3 rna-NM_001183560.1_PE2H3 cds-NP_014784.1_PE2H3 99.4 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:592799-595444:- gene-YOR141C_PE2H4 rna-NM_001183560.1_PE2H4 cds-NP_014784.1_PE2H4 99.4 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:589942-592587:- gene-YOR141C_S288C rna-NM_001183560.1_S288C cds-NP_014784.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000006.1:12408-15053:- gene-YOR141C_SA1 rna-NM_001183560.1_SA1 cds-NP_014784.1_SA1 99.4 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005501.1:573744-576389:- gene-YOR141C_ThermosaccDry rna-NM_001183560.1_ThermosaccDry cds-NP_014784.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005469.1:637422-640067:- gene-YOR141C_VR1 rna-NM_001183560.1_VR1 cds-NP_014784.1_VR1 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000032.1:307192-309837:- gene-YOR141C_ZTW1 rna-NM_001183560.1_ZTW1 cds-NP_014784.1_ZTW1 99.8 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:578590-581232:- gene-YOR141C_Sparadoxus rna-NM_001183560.1_Sparadoxus cds-NP_014784.1_Sparadoxus 90.3 99.7 Verified 1 1 1 False True False False False

Additional files