Gene name: ARP8
Reference locus (S288C): YOR141C
Gene biotype: protein_coding
Description: Actin-like protein ARP8; Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; has mRNA binding activity
Top 10 interactors (score): INO80 (0.999); ARP5 (0.999); ACT1 (0.997); ARP4 (0.996); NHP10 (0.994); RVB2 (0.994); IES3 (0.986); RVB1 (0.986); IES6 (0.986); SWR1 (0.983); IES1 (0.979); IES4 (0.977); IES5 (0.968); IES2 (0.948); ARP6 (0.942); TAF14 (0.935); YAF9 (0.869); VPS71 (0.861); VPS72 (0.841); HTZ1 (0.829)
Homologues (species, bitscore): ACTR8 (Homo sapiens, 202.2); Actr8 (Mus musculus, 200.3); actr8 (Danio rerio, 193.4); actr2 (Xenopus tropicalis, 50.1); Arp8 (Drosophila melanogaster, 157.5); arx-2 (Caenorhabditis elegans, 55.1); ARP9 (Arabidopsis thaliana, 105.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:593396-596041:- | gene-YOR141C_AKU4011 | rna-NM_001183560.1_AKU4011 | cds-NP_014784.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:2568-5213:+ | gene-YOR141C_BG1 | rna-NM_001183560.1_BG1 | cds-NP_014784.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:577556-580201:- | gene-YOR141C_Bruggeman | rna-NM_001183560.1_Bruggeman | cds-NP_014784.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:577576-580221:- | gene-YOR141C_CAT1 | rna-NM_001183560.1_CAT1 | cds-NP_014784.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:569574-572219:- | gene-YOR141C_CBS1585 | rna-NM_001183560.1_CBS1585 | cds-NP_014784.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:574280-576925:- | gene-YOR141C_CBS436 | rna-NM_001183560.1_CBS436 | cds-NP_014784.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:567063-569708:- | gene-YOR141C_CBS6412 | rna-NM_001183560.1_CBS6412 | cds-NP_014784.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:575857-578502:- | gene-YOR141C_CBS6413 | rna-NM_001183560.1_CBS6413 | cds-NP_014784.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:589693-592338:- | gene-YOR141C_CENPK1137D | rna-NM_001183560.1_CENPK1137D | cds-NP_014784.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:569708-572353:- | gene-YOR141C_EthanolRed | rna-NM_001183560.1_EthanolRed | cds-NP_014784.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:574561-577206:- | gene-YOR141C_FaliES1 | rna-NM_001183560.1_FaliES1 | cds-NP_014784.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:66344-68989:+ | gene-YOR141C_JAY291 | rna-NM_001183560.1_JAY291 | cds-NP_014784.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:582113-584758:- | gene-YOR141C_MUCL30387 | rna-NM_001183560.1_MUCL30387 | cds-NP_014784.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:588195-590840:- | gene-YOR141C_MUCL30388 | rna-NM_001183560.1_MUCL30388 | cds-NP_014784.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:577648-580293:- | gene-YOR141C_MUCL39482 | rna-NM_001183560.1_MUCL39482 | cds-NP_014784.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:593248-595893:- | gene-YOR141C_MUCL42920 | rna-NM_001183560.1_MUCL42920 | cds-NP_014784.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:589831-592476:- | gene-YOR141C_NCIM3186 | rna-NM_001183560.1_NCIM3186 | cds-NP_014784.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:583916-586561:- | gene-YOR141C_NCYC1407 | rna-NM_001183560.1_NCYC1407 | cds-NP_014784.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:582422-585067:- | gene-YOR141C_PE2H3 | rna-NM_001183560.1_PE2H3 | cds-NP_014784.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:592799-595444:- | gene-YOR141C_PE2H4 | rna-NM_001183560.1_PE2H4 | cds-NP_014784.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:589942-592587:- | gene-YOR141C_S288C | rna-NM_001183560.1_S288C | cds-NP_014784.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:12408-15053:- | gene-YOR141C_SA1 | rna-NM_001183560.1_SA1 | cds-NP_014784.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:573744-576389:- | gene-YOR141C_ThermosaccDry | rna-NM_001183560.1_ThermosaccDry | cds-NP_014784.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:637422-640067:- | gene-YOR141C_VR1 | rna-NM_001183560.1_VR1 | cds-NP_014784.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:307192-309837:- | gene-YOR141C_ZTW1 | rna-NM_001183560.1_ZTW1 | cds-NP_014784.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:578590-581232:- | gene-YOR141C_Sparadoxus | rna-NM_001183560.1_Sparadoxus | cds-NP_014784.1_Sparadoxus | 90.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |