Gene name: ARP6
Reference locus (S288C): YLR085C
Gene biotype: protein_coding
Description: Actin-like protein ARP6; Actin-related protein that binds nucleosomes; a component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A
Top 10 interactors (score): VPS71 (0.999); RVB1 (0.999); VPS72 (0.999); SWC4 (0.999); RVB2 (0.999); SWR1 (0.999); YAF9 (0.995); SWC5 (0.992); HTZ1 (0.99); SWC3 (0.99); ACT1 (0.981); HTA1 (0.976); ARP4 (0.974); TAF14 (0.964); SWC7 (0.96); BDF1 (0.953); HTB1 (0.946); NHP10 (0.943); ARP8 (0.942); HHF1 (0.936)
Homologues (species, bitscore): ACTR6 (Homo sapiens, 176.0); Actr6 (Mus musculus, 177.2); actr6 (Danio rerio, 166.8); actr6 (Xenopus tropicalis, 182.2); Arp6 (Drosophila melanogaster, 179.5); arp-6 (Caenorhabditis elegans, 147.1); ARP6 (Arabidopsis thaliana, 151.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:283146-284462:- | gene-YLR085C_AKU4011 | rna-NM_001181972.1_AKU4011 | cds-NP_013186.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:246315-247631:- | gene-YLR085C_BG1 | rna-NM_001181972.1_BG1 | cds-NP_013186.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:293053-294369:- | gene-YLR085C_Bruggeman | rna-NM_001181972.1_Bruggeman | cds-NP_013186.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:293373-294689:- | gene-YLR085C_CAT1 | rna-NM_001181972.1_CAT1 | cds-NP_013186.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:290260-291576:- | gene-YLR085C_CBS1585 | rna-NM_001181972.1_CBS1585 | cds-NP_013186.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:280883-282199:- | gene-YLR085C_CBS436 | rna-NM_001181972.1_CBS436 | cds-NP_013186.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:288701-290017:- | gene-YLR085C_CBS6412 | rna-NM_001181972.1_CBS6412 | cds-NP_013186.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:290532-291848:- | gene-YLR085C_CBS6413 | rna-NM_001181972.1_CBS6413 | cds-NP_013186.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:285684-287000:- | gene-YLR085C_CENPK1137D | rna-NM_001181972.1_CENPK1137D | cds-NP_013186.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:282665-283981:- | gene-YLR085C_EthanolRed | rna-NM_001181972.1_EthanolRed | cds-NP_013186.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:282541-283857:- | gene-YLR085C_FaliES1 | rna-NM_001181972.1_FaliES1 | cds-NP_013186.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:57479-58795:- | gene-YLR085C_JAY291 | rna-NM_001181972.1_JAY291 | cds-NP_013186.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:290418-291734:- | gene-YLR085C_MUCL30387 | rna-NM_001181972.1_MUCL30387 | cds-NP_013186.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:298066-299382:- | gene-YLR085C_MUCL30388 | rna-NM_001181972.1_MUCL30388 | cds-NP_013186.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:290778-292094:- | gene-YLR085C_MUCL39482 | rna-NM_001181972.1_MUCL39482 | cds-NP_013186.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:290700-292016:- | gene-YLR085C_MUCL42920 | rna-NM_001181972.1_MUCL42920 | cds-NP_013186.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:300647-301963:- | gene-YLR085C_NCIM3186 | rna-NM_001181972.1_NCIM3186 | cds-NP_013186.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:282849-284165:- | gene-YLR085C_NCYC1407 | rna-NM_001181972.1_NCYC1407 | cds-NP_013186.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:288709-290025:- | gene-YLR085C_PE2H3 | rna-NM_001181972.1_PE2H3 | cds-NP_013186.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:288450-289766:- | gene-YLR085C_PE2H4 | rna-NM_001181972.1_PE2H4 | cds-NP_013186.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:300673-301989:- | gene-YLR085C_S288C | rna-NM_001181972.1_S288C | cds-NP_013186.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:72128-73444:+ | gene-YLR085C_SA1 | rna-NM_001181972.1_SA1 | cds-NP_013186.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:282717-284033:- | gene-YLR085C_ThermosaccDry | rna-NM_001181972.1_ThermosaccDry | cds-NP_013186.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:296901-298217:- | gene-YLR085C_VR1 | rna-NM_001181972.1_VR1 | cds-NP_013186.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:282099-283415:- | gene-YLR085C_ZTW1 | rna-NM_001181972.1_ZTW1 | cds-NP_013186.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:290937-292253:- | gene-YLR085C_Sparadoxus | rna-NM_001181972.1_Sparadoxus | cds-NP_013186.1_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |