Gene name: ARP5
Reference locus (S288C): YNL059C
Gene biotype: protein_coding
Description: Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; promotes nucleosome shifts in the 3 prime direction; Belongs to the actin family
Top 10 interactors (score): ARP8 (0.999); RVB2 (0.999); RVB1 (0.999); INO80 (0.999); IES6 (0.999); ARP4 (0.996); NHP10 (0.989); IES1 (0.986); ACT1 (0.984); IES3 (0.977); IES2 (0.977); IES4 (0.967); TAF14 (0.967); YAF9 (0.95); SWR1 (0.95); IES5 (0.945); VPS72 (0.934); BDF1 (0.926); ARP6 (0.923); VPS71 (0.903)
Homologues (species, bitscore): ACTR5 (Homo sapiens, 210.7); Actr5 (Mus musculus, 214.2); actr5 (Danio rerio, 185.7); actr5 (Xenopus tropicalis, 223.4); Arp5 (Drosophila melanogaster, 262.7); act-5 (Caenorhabditis elegans, 96.3); ARP5 (Arabidopsis thaliana, 287.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:506347-508614:- | gene-YNL059C_AKU4011 | rna-NM_001182898.1_AKU4011 | cds-NP_014339.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:410351-412618:- | gene-YNL059C_BG1 | rna-NM_001182898.1_BG1 | cds-NP_014339.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:517061-519328:- | gene-YNL059C_Bruggeman | rna-NM_001182898.1_Bruggeman | cds-NP_014339.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:560053-562320:- | gene-YNL059C_CAT1 | rna-NM_001182898.1_CAT1 | cds-NP_014339.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:507017-509284:- | gene-YNL059C_CBS1585 | rna-NM_001182898.1_CBS1585 | cds-NP_014339.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:575310-577577:- | gene-YNL059C_CBS436 | rna-NM_001182898.1_CBS436 | cds-NP_014339.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:502110-504377:- | gene-YNL059C_CBS6412 | rna-NM_001182898.1_CBS6412 | cds-NP_014339.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:503428-505695:- | gene-YNL059C_CBS6413 | rna-NM_001182898.1_CBS6413 | cds-NP_014339.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:506632-508899:- | gene-YNL059C_CENPK1137D | rna-NM_001182898.1_CENPK1137D | cds-NP_014339.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:509169-511436:- | gene-YNL059C_EthanolRed | rna-NM_001182898.1_EthanolRed | cds-NP_014339.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:499694-501961:- | gene-YNL059C_FaliES1 | rna-NM_001182898.1_FaliES1 | cds-NP_014339.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:14782-17049:- | gene-YNL059C_JAY291 | rna-NM_001182898.1_JAY291 | cds-NP_014339.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:513214-515481:- | gene-YNL059C_MUCL30387 | rna-NM_001182898.1_MUCL30387 | cds-NP_014339.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:548874-551141:- | gene-YNL059C_MUCL30388 | rna-NM_001182898.1_MUCL30388 | cds-NP_014339.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:504433-506700:- | gene-YNL059C_MUCL39482 | rna-NM_001182898.1_MUCL39482 | cds-NP_014339.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:508326-510593:- | gene-YNL059C_MUCL42920 | rna-NM_001182898.1_MUCL42920 | cds-NP_014339.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:512637-514904:- | gene-YNL059C_NCIM3186 | rna-NM_001182898.1_NCIM3186 | cds-NP_014339.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:506485-508752:- | gene-YNL059C_NCYC1407 | rna-NM_001182898.1_NCYC1407 | cds-NP_014339.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:509698-511965:- | gene-YNL059C_PE2H3 | rna-NM_001182898.1_PE2H3 | cds-NP_014339.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:504773-507040:- | gene-YNL059C_PE2H4 | rna-NM_001182898.1_PE2H4 | cds-NP_014339.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:512668-514935:- | gene-YNL059C_S288C | rna-NM_001182898.1_S288C | cds-NP_014339.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:97617-99884:- | gene-YNL059C_SA1 | rna-NM_001182898.1_SA1 | cds-NP_014339.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:500569-502836:- | gene-YNL059C_ThermosaccDry | rna-NM_001182898.1_ThermosaccDry | cds-NP_014339.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:519659-521926:- | gene-YNL059C_VR1 | rna-NM_001182898.1_VR1 | cds-NP_014339.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:409890-412157:- | gene-YNL059C_ZTW1 | rna-NM_001182898.1_ZTW1 | cds-NP_014339.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:516128-518395:- | gene-YNL059C_Sparadoxus | rna-NM_001182898.1_Sparadoxus | cds-NP_014339.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |