Gene name: ARP4
Reference locus (S288C): YJL081C
Gene biotype: protein_coding
Description: Actin-related protein 4; Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes
Top 10 interactors (score): EPL1 (0.999); TRA1 (0.999); INO80 (0.999); SWC4 (0.999); SWR1 (0.999); RVB2 (0.999); RVB1 (0.999); ESA1 (0.999); ACT1 (0.998); EAF5 (0.998); EAF1 (0.998); YAF9 (0.997); ARP5 (0.996); ARP8 (0.996); EAF3 (0.996); NHP10 (0.996); SNF5 (0.995); SNF12 (0.994); RSC6 (0.994); SNF2 (0.994)
Homologues (species, bitscore): ACTL6B (Homo sapiens, 177.6); Actl6b (Mus musculus, 177.2); actl6b (Danio rerio, 178.3); actb (Xenopus tropicalis, 156.0); Act87E (Drosophila melanogaster, 158.7); swsn-6 (Caenorhabditis elegans, 158.3); ARP4 (Arabidopsis thaliana, 188.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:266515-267984:- | gene-YJL081C_AKU4011 | rna-NM_001181514.1_AKU4011 | cds-NP_012454.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:346469-347938:+ | gene-YJL081C_BG1 | rna-NM_001181514.1_BG1 | cds-NP_012454.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:277961-279430:- | gene-YJL081C_Bruggeman | rna-NM_001181514.1_Bruggeman | cds-NP_012454.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:282856-284325:- | gene-YJL081C_CAT1 | rna-NM_001181514.1_CAT1 | cds-NP_012454.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:278175-279644:- | gene-YJL081C_CBS1585 | rna-NM_001181514.1_CBS1585 | cds-NP_012454.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:296291-297760:- | gene-YJL081C_CBS436 | rna-NM_001181514.1_CBS436 | cds-NP_012454.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:267273-268742:- | gene-YJL081C_CBS6412 | rna-NM_001181514.1_CBS6412 | cds-NP_012454.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:268628-270097:- | gene-YJL081C_CBS6413 | rna-NM_001181514.1_CBS6413 | cds-NP_012454.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:266266-267735:- | gene-YJL081C_CENPK1137D | rna-NM_001181514.1_CENPK1137D | cds-NP_012454.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:270365-271834:- | gene-YJL081C_EthanolRed | rna-NM_001181514.1_EthanolRed | cds-NP_012454.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:281939-283408:- | gene-YJL081C_FaliES1 | rna-NM_001181514.1_FaliES1 | cds-NP_012454.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:79561-81030:- | gene-YJL081C_JAY291 | rna-NM_001181514.1_JAY291 | cds-NP_012454.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:280231-281700:- | gene-YJL081C_MUCL30387 | rna-NM_001181514.1_MUCL30387 | cds-NP_012454.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:276307-277776:- | gene-YJL081C_MUCL30388 | rna-NM_001181514.1_MUCL30388 | cds-NP_012454.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:270933-272402:- | gene-YJL081C_MUCL39482 | rna-NM_001181514.1_MUCL39482 | cds-NP_012454.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:277138-278607:- | gene-YJL081C_MUCL42920 | rna-NM_001181514.1_MUCL42920 | cds-NP_012454.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:283781-285250:- | gene-YJL081C_NCIM3186 | rna-NM_001181514.1_NCIM3186 | cds-NP_012454.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:269621-271090:- | gene-YJL081C_NCYC1407 | rna-NM_001181514.1_NCYC1407 | cds-NP_012454.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:281988-283457:- | gene-YJL081C_PE2H3 | rna-NM_001181514.1_PE2H3 | cds-NP_012454.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:281632-283101:- | gene-YJL081C_PE2H4 | rna-NM_001181514.1_PE2H4 | cds-NP_012454.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:283802-285271:- | gene-YJL081C_S288C | rna-NM_001181514.1_S288C | cds-NP_012454.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:79493-80962:- | gene-YJL081C_SA1 | rna-NM_001181514.1_SA1 | cds-NP_012454.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:275354-276823:- | gene-YJL081C_ThermosaccDry | rna-NM_001181514.1_ThermosaccDry | cds-NP_012454.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:276864-278333:- | gene-YJL081C_VR1 | rna-NM_001181514.1_VR1 | cds-NP_012454.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:256707-258176:- | gene-YJL081C_ZTW1 | rna-NM_001181514.1_ZTW1 | cds-NP_012454.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:280766-282235:- | gene-YJL081C_Sparadoxus | rna-NM_001181514.1_Sparadoxus | cds-NP_012454.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |