Gene name: ARP3
Reference locus (S288C): YJR065C
Gene biotype: protein_coding
Description: Actin-related protein 3; Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity
Top 10 interactors (score): LAS17 (0.999); ARP2 (0.999); ARC40 (0.999); ARC19 (0.999); ARC18 (0.999); ARC35 (0.999); ARC15 (0.999); ACT1 (0.994); ABP1 (0.987); PFY1 (0.983); LDB17 (0.977); COF1 (0.963); VRP1 (0.962); PAN1 (0.939); BNR1 (0.934); SAC6 (0.929); CDC42 (0.911); SLA2 (0.905); CRN1 (0.896); PRE6 (0.894)
Homologues (species, bitscore): ACTR3B (Homo sapiens, 507.7); Actr3b (Mus musculus, 507.3); actr3b (Danio rerio, 500.7); actr3 (Xenopus tropicalis, 451.1); Arp3 (Drosophila melanogaster, 492.3); arx-1 (Caenorhabditis elegans, 492.3); DIS1 (Arabidopsis thaliana, 473.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:529335-530684:- | gene-YJR065C_AKU4011 | rna-NM_001181723.3_AKU4011 | cds-NP_012599.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:76938-78287:+ | gene-YJR065C_BG1 | rna-NM_001181723.3_BG1 | cds-NP_012599.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:542845-544194:- | gene-YJR065C_Bruggeman | rna-NM_001181723.3_Bruggeman | cds-NP_012599.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:547155-548504:- | gene-YJR065C_CAT1 | rna-NM_001181723.3_CAT1 | cds-NP_012599.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:541399-542748:- | gene-YJR065C_CBS1585 | rna-NM_001181723.3_CBS1585 | cds-NP_012599.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:559471-560820:- | gene-YJR065C_CBS436 | rna-NM_001181723.3_CBS436 | cds-NP_012599.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:528548-529897:- | gene-YJR065C_CBS6412 | rna-NM_001181723.3_CBS6412 | cds-NP_012599.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:530846-532195:- | gene-YJR065C_CBS6413 | rna-NM_001181723.3_CBS6413 | cds-NP_012599.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:540169-541518:- | gene-YJR065C_CENPK1137D | rna-NM_001181723.3_CENPK1137D | cds-NP_012599.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:533729-535078:- | gene-YJR065C_EthanolRed | rna-NM_001181723.3_EthanolRed | cds-NP_012599.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:545195-546544:- | gene-YJR065C_FaliES1 | rna-NM_001181723.3_FaliES1 | cds-NP_012599.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:142846-144195:+ | gene-YJR065C_JAY291 | rna-NM_001181723.3_JAY291 | cds-NP_012599.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:543381-544730:- | gene-YJR065C_MUCL30387 | rna-NM_001181723.3_MUCL30387 | cds-NP_012599.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:540667-542016:- | gene-YJR065C_MUCL30388 | rna-NM_001181723.3_MUCL30388 | cds-NP_012599.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:534861-536210:- | gene-YJR065C_MUCL39482 | rna-NM_001181723.3_MUCL39482 | cds-NP_012599.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:539098-540447:- | gene-YJR065C_MUCL42920 | rna-NM_001181723.3_MUCL42920 | cds-NP_012599.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:557788-559137:- | gene-YJR065C_NCIM3186 | rna-NM_001181723.3_NCIM3186 | cds-NP_012599.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:532425-533774:- | gene-YJR065C_NCYC1407 | rna-NM_001181723.3_NCYC1407 | cds-NP_012599.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:550318-551667:- | gene-YJR065C_PE2H3 | rna-NM_001181723.3_PE2H3 | cds-NP_012599.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:544014-545363:- | gene-YJR065C_PE2H4 | rna-NM_001181723.3_PE2H4 | cds-NP_012599.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:557809-559158:- | gene-YJR065C_S288C | rna-NM_001181723.3_S288C | cds-NP_012599.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:16384-17733:- | gene-YJR065C_SA1 | rna-NM_001181723.3_SA1 | cds-NP_012599.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:539127-540476:- | gene-YJR065C_ThermosaccDry | rna-NM_001181723.3_ThermosaccDry | cds-NP_012599.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:541004-542353:- | gene-YJR065C_VR1 | rna-NM_001181723.3_VR1 | cds-NP_012599.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:518522-519871:- | gene-YJR065C_ZTW1 | rna-NM_001181723.3_ZTW1 | cds-NP_012599.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:551876-553225:- | gene-YJR065C_Sparadoxus | rna-NM_001181723.3_Sparadoxus | cds-NP_012599.3_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |