Gene name: ARP2
Reference locus (S288C): YDL029W
Gene biotype: protein_coding
Description: Actin-related protein 2; Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; required for efficient Golgi-to-ER trafficking in COPI mutants
Top 10 interactors (score): SLA2 (0.999); LAS17 (0.999); ARC40 (0.999); ARC19 (0.999); ARC18 (0.999); ABP1 (0.999); ARP3 (0.999); ARC35 (0.999); ARC15 (0.999); SAC6 (0.996); COF1 (0.995); PAN1 (0.993); VRP1 (0.993); PFY1 (0.993); CRN1 (0.992); ACT1 (0.991); MYO5 (0.989); AIM7 (0.987); MYO3 (0.986); CDC42 (0.985)
Homologues (species, bitscore): ACTR2 (Homo sapiens, 543.1); Actr2 (Mus musculus, 548.5); actr2a (Danio rerio, 543.5); actr2 (Xenopus tropicalis, 543.1); Arp2 (Drosophila melanogaster, 533.5); arx-2 (Caenorhabditis elegans, 495.0); ARP2 (Arabidopsis thaliana, 481.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:385416-386714:+ | gene-YDL029W_AKU4011 | rna-NM_001180088.1_AKU4011 | cds-NP_010255.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:163155-164453:- | gene-YDL029W_BG1 | rna-NM_001180088.1_BG1 | cds-NP_010255.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:404082-405380:+ | gene-YDL029W_Bruggeman | rna-NM_001180088.1_Bruggeman | cds-NP_010255.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:398624-399922:+ | gene-YDL029W_CAT1 | rna-NM_001180088.1_CAT1 | cds-NP_010255.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:381831-383129:+ | gene-YDL029W_CBS1585 | rna-NM_001180088.1_CBS1585 | cds-NP_010255.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:399363-400661:+ | gene-YDL029W_CBS436 | rna-NM_001180088.1_CBS436 | cds-NP_010255.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:379626-380924:+ | gene-YDL029W_CBS6412 | rna-NM_001180088.1_CBS6412 | cds-NP_010255.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:401593-402891:+ | gene-YDL029W_CBS6413 | rna-NM_001180088.1_CBS6413 | cds-NP_010255.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:398199-399497:+ | gene-YDL029W_CENPK1137D | rna-NM_001180088.1_CENPK1137D | cds-NP_010255.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:394246-395544:+ | gene-YDL029W_EthanolRed | rna-NM_001180088.1_EthanolRed | cds-NP_010255.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:400438-401736:+ | gene-YDL029W_FaliES1 | rna-NM_001180088.1_FaliES1 | cds-NP_010255.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:14982-16280:+ | gene-YDL029W_JAY291 | rna-NM_001180088.1_JAY291 | cds-NP_010255.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:399813-401111:+ | gene-YDL029W_MUCL30387 | rna-NM_001180088.1_MUCL30387 | cds-NP_010255.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:390327-391625:+ | gene-YDL029W_MUCL30388 | rna-NM_001180088.1_MUCL30388 | cds-NP_010255.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:383009-384307:+ | gene-YDL029W_MUCL39482 | rna-NM_001180088.1_MUCL39482 | cds-NP_010255.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:305373-306671:+ | gene-YDL029W_MUCL42920 | rna-NM_001180088.1_MUCL42920 | cds-NP_010255.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:399263-400561:+ | gene-YDL029W_NCIM3186 | rna-NM_001180088.1_NCIM3186 | cds-NP_010255.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:382924-384222:+ | gene-YDL029W_NCYC1407 | rna-NM_001180088.1_NCYC1407 | cds-NP_010255.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:390463-391761:+ | gene-YDL029W_PE2H3 | rna-NM_001180088.1_PE2H3 | cds-NP_010255.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:389821-391119:+ | gene-YDL029W_PE2H4 | rna-NM_001180088.1_PE2H4 | cds-NP_010255.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:399340-400638:+ | gene-YDL029W_S288C | rna-NM_001180088.1_S288C | cds-NP_010255.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:34300-35598:- | gene-YDL029W_SA1 | rna-NM_001180088.1_SA1 | cds-NP_010255.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:399896-401194:+ | gene-YDL029W_ThermosaccDry | rna-NM_001180088.1_ThermosaccDry | cds-NP_010255.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:402957-404255:+ | gene-YDL029W_VR1 | rna-NM_001180088.1_VR1 | cds-NP_010255.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:397798-399096:+ | gene-YDL029W_ZTW1 | rna-NM_001180088.1_ZTW1 | cds-NP_010255.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:402023-403322:+ | gene-YDL029W_Sparadoxus | rna-NM_001180088.1_Sparadoxus | cds-NP_010255.1_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |