Gene name: ARP1
Reference locus (S288C): YHR129C
Gene biotype: protein_coding
Description: Centractin; Actin-related protein of the dynactin complex; required for spindle orientation and nuclear migration; forms actin-like short filament composed of 9 or 10 Arp1p monomers; putative ortholog of mammalian centractin
Top 10 interactors (score): NIP100 (0.998); DYN1 (0.996); JNM1 (0.996); CAP2 (0.991); COF1 (0.979); LDB18 (0.975); MYO1 (0.966); HAP3 (0.965); ACT1 (0.963); CAP1 (0.926); KAR9 (0.912); PFY1 (0.902); ARP10 (0.895); TUB3 (0.867); TUB2 (0.849); ARC18 (0.828); TPM1 (0.827); NUM1 (0.826); PAC1 (0.825); BIM1 (0.808)
Homologues (species, bitscore): ACTR1B (Homo sapiens, 394.8); Actr1b (Mus musculus, 394.4); actr1 (Danio rerio, 393.3); actr1a (Xenopus tropicalis, 391.3); Arp1 (Drosophila melanogaster, 380.6); act-4 (Caenorhabditis elegans, 365.2); ACT4 (Arabidopsis thaliana, 370.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:349926-351080:- | gene-YHR129C_AKU4011 | rna-NM_001179259.1_AKU4011 | cds-NP_011997.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:166794-167948:+ | gene-YHR129C_BG1 | rna-NM_001179259.1_BG1 | cds-NP_011997.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:357216-358370:- | gene-YHR129C_Bruggeman | rna-NM_001179259.1_Bruggeman | cds-NP_011997.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:352351-353505:- | gene-YHR129C_CAT1 | rna-NM_001179259.1_CAT1 | cds-NP_011997.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:348950-350104:- | gene-YHR129C_CBS1585 | rna-NM_001179259.1_CBS1585 | cds-NP_011997.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:346308-347462:- | gene-YHR129C_CBS436 | rna-NM_001179259.1_CBS436 | cds-NP_011997.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:350388-351542:- | gene-YHR129C_CBS6412 | rna-NM_001179259.1_CBS6412 | cds-NP_011997.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:349977-351131:- | gene-YHR129C_CBS6413 | rna-NM_001179259.1_CBS6413 | cds-NP_011997.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:356173-357327:- | gene-YHR129C_CENPK1137D | rna-NM_001179259.1_CENPK1137D | cds-NP_011997.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:408831-409985:- | gene-YHR129C_EthanolRed | rna-NM_001179259.1_EthanolRed | cds-NP_011997.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:350319-351473:- | gene-YHR129C_FaliES1 | rna-NM_001179259.1_FaliES1 | cds-NP_011997.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000139.1:22932-24086:- | gene-YHR129C_JAY291 | rna-NM_001179259.1_JAY291 | cds-NP_011997.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:356946-358100:- | gene-YHR129C_MUCL30387 | rna-NM_001179259.1_MUCL30387 | cds-NP_011997.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:357145-358299:- | gene-YHR129C_MUCL30388 | rna-NM_001179259.1_MUCL30388 | cds-NP_011997.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:349289-350443:- | gene-YHR129C_MUCL39482 | rna-NM_001179259.1_MUCL39482 | cds-NP_011997.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:355526-356680:- | gene-YHR129C_MUCL42920 | rna-NM_001179259.1_MUCL42920 | cds-NP_011997.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:362881-364035:- | gene-YHR129C_NCIM3186 | rna-NM_001179259.1_NCIM3186 | cds-NP_011997.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:351499-352653:- | gene-YHR129C_NCYC1407 | rna-NM_001179259.1_NCYC1407 | cds-NP_011997.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:350950-352104:- | gene-YHR129C_PE2H3 | rna-NM_001179259.1_PE2H3 | cds-NP_011997.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:358377-359531:- | gene-YHR129C_PE2H4 | rna-NM_001179259.1_PE2H4 | cds-NP_011997.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:362999-364153:- | gene-YHR129C_S288C | rna-NM_001179259.1_S288C | cds-NP_011997.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000103.1:25252-26406:+ | gene-YHR129C_SA1 | rna-NM_001179259.1_SA1 | cds-NP_011997.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:351402-352556:- | gene-YHR129C_ThermosaccDry | rna-NM_001179259.1_ThermosaccDry | cds-NP_011997.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:359860-361014:- | gene-YHR129C_VR1 | rna-NM_001179259.1_VR1 | cds-NP_011997.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:342408-343562:- | gene-YHR129C_ZTW1 | rna-NM_001179259.1_ZTW1 | cds-NP_011997.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:348839-349993:- | gene-YHR129C_Sparadoxus | rna-NM_001179259.1_Sparadoxus | cds-NP_011997.1_Sparadoxus | 90.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |