Gene name: ARL1
Reference locus (S288C): YBR164C
Gene biotype: protein_coding
Description: ADP-ribosylation factor-like protein 1; Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; role in membrane organization at trans-Golgi network; required for delivery of Atg9p to the phagophore assembly site during autophagy under high temperature stress; required with Ypt6p for starvation-induced autophagy; required for the CVT pathway under non-starvation conditions; G protein of the Ras superfamily, similar to ADP-ribosylation factor
Top 10 interactors (score): SEC7 (0.994); GLO3 (0.988); YPT6 (0.984); GCS1 (0.981); GEA2 (0.977); GEA1 (0.967); MON2 (0.966); IMH1 (0.951); YEL1 (0.942); SYT1 (0.932); COG8 (0.909); LSB5 (0.882); GTS1 (0.872); AGE2 (0.861); DOP1 (0.85); GYP1 (0.843); ENV7 (0.839); ARL3 (0.834); TLG2 (0.833); RET2 (0.829)
Homologues (species, bitscore): ARL1 (Homo sapiens, 247.7); Arl1 (Mus musculus, 246.9); arl1 (Danio rerio, 248.4); arl1 (Xenopus tropicalis, 246.5); Arl1 (Drosophila melanogaster, 225.7); arl-1 (Caenorhabditis elegans, 226.9); ARF3 (Arabidopsis thaliana, 239.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:550748-551299:- | gene-YBR164C_AKU4011 | rna-NM_001178512.3_AKU4011 | cds-NP_009723.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:541260-541811:- | gene-YBR164C_BG1 | rna-NM_001178512.3_BG1 | cds-NP_009723.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:553771-554322:- | gene-YBR164C_Bruggeman | rna-NM_001178512.3_Bruggeman | cds-NP_009723.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:447887-448438:- | gene-YBR164C_CAT1 | rna-NM_001178512.3_CAT1 | cds-NP_009723.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:542531-543082:- | gene-YBR164C_CBS1585 | rna-NM_001178512.3_CBS1585 | cds-NP_009723.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:550613-551164:- | gene-YBR164C_CBS436 | rna-NM_001178512.3_CBS436 | cds-NP_009723.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:640014-640565:- | gene-YBR164C_CBS6412 | rna-NM_001178512.3_CBS6412 | cds-NP_009723.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:548086-548637:- | gene-YBR164C_CBS6413 | rna-NM_001178512.3_CBS6413 | cds-NP_009723.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:561675-562226:- | gene-YBR164C_CENPK1137D | rna-NM_001178512.3_CENPK1137D | cds-NP_009723.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:676594-677145:- | gene-YBR164C_EthanolRed | rna-NM_001178512.3_EthanolRed | cds-NP_009723.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:566826-567377:- | gene-YBR164C_FaliES1 | rna-NM_001178512.3_FaliES1 | cds-NP_009723.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000310.1:6656-7207:- | gene-YBR164C_JAY291 | rna-NM_001178512.3_JAY291 | cds-NP_009723.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:555425-555976:- | gene-YBR164C_MUCL30387 | rna-NM_001178512.3_MUCL30387 | cds-NP_009723.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:554710-555261:- | gene-YBR164C_MUCL30388 | rna-NM_001178512.3_MUCL30388 | cds-NP_009723.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:540903-541454:- | gene-YBR164C_MUCL39482 | rna-NM_001178512.3_MUCL39482 | cds-NP_009723.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:550826-551377:- | gene-YBR164C_MUCL42920 | rna-NM_001178512.3_MUCL42920 | cds-NP_009723.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:567672-568223:- | gene-YBR164C_NCIM3186 | rna-NM_001178512.3_NCIM3186 | cds-NP_009723.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:543471-544022:- | gene-YBR164C_NCYC1407 | rna-NM_001178512.3_NCYC1407 | cds-NP_009723.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:556130-556681:- | gene-YBR164C_PE2H3 | rna-NM_001178512.3_PE2H3 | cds-NP_009723.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:553806-554357:- | gene-YBR164C_PE2H4 | rna-NM_001178512.3_PE2H4 | cds-NP_009723.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:567875-568426:- | gene-YBR164C_S288C | rna-NM_001178512.3_S288C | cds-NP_009723.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:89123-89674:- | gene-YBR164C_SA1 | rna-NM_001178512.3_SA1 | cds-NP_009723.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:565836-566387:- | gene-YBR164C_ThermosaccDry | rna-NM_001178512.3_ThermosaccDry | cds-NP_009723.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:547283-547834:- | gene-YBR164C_VR1 | rna-NM_001178512.3_VR1 | cds-NP_009723.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:540951-541502:- | gene-YBR164C_ZTW1 | rna-NM_001178512.3_ZTW1 | cds-NP_009723.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:578294-578845:- | gene-YBR164C_Sparadoxus | rna-NM_001178512.3_Sparadoxus | cds-NP_009723.3_Sparadoxus | 93.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |