Gene name: ARF3
Reference locus (S288C): YOR094W
Gene biotype: protein_coding
Description: Glucose-repressible ADP-ribosylation factor; GTPase of Ras superfamily involved in regulating cell polarity and invasive growth; localizes to dynamic spots at plasma membrane and modulates PtdIns(4,5)P2 levels to facilitate endocytosis; required for localization of endocytic protein Lsb5p to correct cortical site in cells; also has mRNA binding activity; homolog of mammalian Arf6
Top 10 interactors (score): YEL1 (0.986); SEC7 (0.976); GEA2 (0.974); GTS1 (0.969); SEC10 (0.968); GEA1 (0.965); LSB5 (0.958); GCS1 (0.948); CDC42 (0.943); ACT1 (0.93); GLO3 (0.929); EXO70 (0.925); SYT1 (0.921); GGA1 (0.918); ARF2 (0.916); ARF1 (0.916); GGA2 (0.916); LAS17 (0.911); INP52 (0.908); RHO1 (0.905)
Homologues (species, bitscore): ARF6 (Homo sapiens, 227.3); Arf6 (Mus musculus, 227.3); arf6a (Danio rerio, 224.9); arf6.2 (Xenopus tropicalis, 226.9); Arf51F (Drosophila melanogaster, 223.0); arf-6 (Caenorhabditis elegans, 223.8); ARFA1F (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:486867-487418:+ | gene-YOR094W_AKU4011 | rna-NM_001183513.1_AKU4011 | cds-NP_014737.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:91632-92183:- | gene-YOR094W_BG1 | rna-NM_001183513.1_BG1 | cds-NP_014737.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:490457-491008:+ | gene-YOR094W_Bruggeman | rna-NM_001183513.1_Bruggeman | cds-NP_014737.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:490432-490983:+ | gene-YOR094W_CAT1 | rna-NM_001183513.1_CAT1 | cds-NP_014737.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:482159-482710:+ | gene-YOR094W_CBS1585 | rna-NM_001183513.1_CBS1585 | cds-NP_014737.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:487192-487743:+ | gene-YOR094W_CBS436 | rna-NM_001183513.1_CBS436 | cds-NP_014737.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:480900-481451:+ | gene-YOR094W_CBS6412 | rna-NM_001183513.1_CBS6412 | cds-NP_014737.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:488195-488746:+ | gene-YOR094W_CBS6413 | rna-NM_001183513.1_CBS6413 | cds-NP_014737.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:502840-503391:+ | gene-YOR094W_CENPK1137D | rna-NM_001183513.1_CENPK1137D | cds-NP_014737.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:483398-483949:+ | gene-YOR094W_EthanolRed | rna-NM_001183513.1_EthanolRed | cds-NP_014737.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:486907-487458:+ | gene-YOR094W_FaliES1 | rna-NM_001183513.1_FaliES1 | cds-NP_014737.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:71779-72330:- | gene-YOR094W_JAY291 | rna-NM_001183513.1_JAY291 | cds-NP_014737.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:494993-495544:+ | gene-YOR094W_MUCL30387 | rna-NM_001183513.1_MUCL30387 | cds-NP_014737.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:500179-500730:+ | gene-YOR094W_MUCL30388 | rna-NM_001183513.1_MUCL30388 | cds-NP_014737.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:489795-490346:+ | gene-YOR094W_MUCL39482 | rna-NM_001183513.1_MUCL39482 | cds-NP_014737.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:505899-506450:+ | gene-YOR094W_MUCL42920 | rna-NM_001183513.1_MUCL42920 | cds-NP_014737.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:502684-503235:+ | gene-YOR094W_NCIM3186 | rna-NM_001183513.1_NCIM3186 | cds-NP_014737.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:496256-496807:+ | gene-YOR094W_NCYC1407 | rna-NM_001183513.1_NCYC1407 | cds-NP_014737.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:495265-495816:+ | gene-YOR094W_PE2H3 | rna-NM_001183513.1_PE2H3 | cds-NP_014737.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:505641-506192:+ | gene-YOR094W_PE2H4 | rna-NM_001183513.1_PE2H4 | cds-NP_014737.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:502795-503346:+ | gene-YOR094W_S288C | rna-NM_001183513.1_S288C | cds-NP_014737.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000098.1:19462-20013:- | gene-YOR094W_SA1 | rna-NM_001183513.1_SA1 | cds-NP_014737.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:486061-486612:+ | gene-YOR094W_ThermosaccDry | rna-NM_001183513.1_ThermosaccDry | cds-NP_014737.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:488186-488737:+ | gene-YOR094W_VR1 | rna-NM_001183513.1_VR1 | cds-NP_014737.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:220048-220599:+ | gene-YOR094W_ZTW1 | rna-NM_001183513.1_ZTW1 | cds-NP_014737.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:492051-492602:+ | gene-YOR094W_Sparadoxus | rna-NM_001183513.1_Sparadoxus | cds-NP_014737.1_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |