Gene name: ARF1
Reference locus (S288C): YDL192W
Gene biotype: protein_coding
Description: ADP-ribosylation factor; GTPase of the Ras superfamily involved in regulation of coated vesicle formation in intracellular trafficking within the Golgi; ARF1 has a paralog, ARF2, that arose from the whole genome duplication; arf1 arf2 double null mutation is complemented by human ARF1, ARF4, ARF5, or ARF6
Top 10 interactors (score): GLO3 (0.999); SEC7 (0.999); ARF2 (0.999); GCS1 (0.997); CHS5 (0.997); GEA2 (0.997); SEC21 (0.992); PIK1 (0.991); BCH1 (0.989); GEA1 (0.987); SEC26 (0.984); SEC27 (0.978); SPO14 (0.976); SEC22 (0.975); SPS18 (0.975); APL6 (0.972); COP1 (0.971); GGA2 (0.971); CHC1 (0.965); GGA1 (0.965)
Homologues (species, bitscore): ARF1 (Homo sapiens, 300.1); Arf2 (Mus musculus, 301.6); arf2 (Danio rerio, 303.9); arf1 (Xenopus tropicalis, 301.2); Arf79F (Drosophila melanogaster, 305.4); arf-1.2 (Caenorhabditis elegans, 304.7); ARFA1E (Arabidopsis thaliana, 303.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:99807-100352:+ | gene-YDL192W_AKU4011 | rna-NM_001180252.1_AKU4011 | cds-NP_010089.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:448319-448864:- | gene-YDL192W_BG1 | rna-NM_001180252.1_BG1 | cds-NP_010089.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:116169-116714:+ | gene-YDL192W_Bruggeman | rna-NM_001180252.1_Bruggeman | cds-NP_010089.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:118406-118951:+ | gene-YDL192W_CAT1 | rna-NM_001180252.1_CAT1 | cds-NP_010089.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:98659-99204:+ | gene-YDL192W_CBS1585 | rna-NM_001180252.1_CBS1585 | cds-NP_010089.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:313561-314106:+ | gene-YDL192W_CBS436 | rna-NM_001180252.1_CBS436 | cds-NP_010089.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:98773-99318:+ | gene-YDL192W_CBS6412 | rna-NM_001180252.1_CBS6412 | cds-NP_010089.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:116317-116862:+ | gene-YDL192W_CBS6413 | rna-NM_001180252.1_CBS6413 | cds-NP_010089.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:114992-115537:+ | gene-YDL192W_CENPK1137D | rna-NM_001180252.1_CENPK1137D | cds-NP_010089.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:112458-113003:+ | gene-YDL192W_EthanolRed | rna-NM_001180252.1_EthanolRed | cds-NP_010089.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:117064-117609:+ | gene-YDL192W_FaliES1 | rna-NM_001180252.1_FaliES1 | cds-NP_010089.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:1642-2187:- | gene-YDL192W_JAY291 | rna-NM_001180252.1_JAY291 | cds-NP_010089.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:114437-114982:+ | gene-YDL192W_MUCL30387 | rna-NM_001180252.1_MUCL30387 | cds-NP_010089.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:104250-104795:+ | gene-YDL192W_MUCL30388 | rna-NM_001180252.1_MUCL30388 | cds-NP_010089.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:99503-100048:+ | gene-YDL192W_MUCL39482 | rna-NM_001180252.1_MUCL39482 | cds-NP_010089.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:115574-116119:+ | gene-YDL192W_MUCL42920 | rna-NM_001180252.1_MUCL42920 | cds-NP_010089.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:116244-116789:+ | gene-YDL192W_NCIM3186 | rna-NM_001180252.1_NCIM3186 | cds-NP_010089.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:99460-100005:+ | gene-YDL192W_NCYC1407 | rna-NM_001180252.1_NCYC1407 | cds-NP_010089.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:107209-107754:+ | gene-YDL192W_PE2H3 | rna-NM_001180252.1_PE2H3 | cds-NP_010089.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:107219-107764:+ | gene-YDL192W_PE2H4 | rna-NM_001180252.1_PE2H4 | cds-NP_010089.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:116321-116866:+ | gene-YDL192W_S288C | rna-NM_001180252.1_S288C | cds-NP_010089.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:30813-31358:+ | gene-YDL192W_SA1 | rna-NM_001180252.1_SA1 | cds-NP_010089.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:116823-117368:+ | gene-YDL192W_ThermosaccDry | rna-NM_001180252.1_ThermosaccDry | cds-NP_010089.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:117760-118305:+ | gene-YDL192W_VR1 | rna-NM_001180252.1_VR1 | cds-NP_010089.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:115495-116040:+ | gene-YDL192W_ZTW1 | rna-NM_001180252.1_ZTW1 | cds-NP_010089.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:118911-119456:+ | gene-YDL192W_Sparadoxus | rna-NM_001180252.1_Sparadoxus | cds-NP_010089.1_Sparadoxus | 97.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |