Gene name: ARC40
Reference locus (S288C): YBR234C
Gene biotype: protein_coding
Description: Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; Belongs to the WD repeat ARPC1 family
Top 10 interactors (score): ARC35 (0.999); ARC15 (0.999); ARC19 (0.999); ARC18 (0.999); ARP3 (0.999); ARP2 (0.999); LAS17 (0.996); ACT1 (0.954); EXO70 (0.91); MYO5 (0.903); BNI1 (0.896); BNR1 (0.854); APM4 (0.852); ABP1 (0.849); CAP2 (0.829); AIM7 (0.828); PFY1 (0.818); CRN1 (0.794); YAP1801 (0.792); APS2 (0.786)
Homologues (species, bitscore): ARPC1A (Homo sapiens, 242.7); Arpc1a (Mus musculus, 240.7); arpc1a (Danio rerio, 237.3); ENSXETP00000039630 (Xenopus tropicalis, 238.4); Arpc1 (Drosophila melanogaster, 252.7); arx-3 (Caenorhabditis elegans, 245.7); ARPC1B (Arabidopsis thaliana, 208.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:669745-670899:- | gene-YBR234C_AKU4011 | rna-NM_001178582.1_AKU4011 | cds-NP_009793.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:40708-41862:- | gene-YBR234C_BG1 | rna-NM_001178582.1_BG1 | cds-NP_009793.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:670900-672054:- | gene-YBR234C_Bruggeman | rna-NM_001178582.1_Bruggeman | cds-NP_009793.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:674106-675260:- | gene-YBR234C_CAT1 | rna-NM_001178582.1_CAT1 | cds-NP_009793.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:661277-662431:- | gene-YBR234C_CBS1585 | rna-NM_001178582.1_CBS1585 | cds-NP_009793.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:667702-668856:- | gene-YBR234C_CBS436 | rna-NM_001178582.1_CBS436 | cds-NP_009793.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:756257-757411:- | gene-YBR234C_CBS6412 | rna-NM_001178582.1_CBS6412 | cds-NP_009793.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:667321-668475:- | gene-YBR234C_CBS6413 | rna-NM_001178582.1_CBS6413 | cds-NP_009793.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:679215-680369:- | gene-YBR234C_CENPK1137D | rna-NM_001178582.1_CENPK1137D | cds-NP_009793.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:792986-794140:- | gene-YBR234C_EthanolRed | rna-NM_001178582.1_EthanolRed | cds-NP_009793.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:686093-687247:- | gene-YBR234C_FaliES1 | rna-NM_001178582.1_FaliES1 | cds-NP_009793.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:115103-116257:+ | gene-YBR234C_JAY291 | rna-NM_001178582.1_JAY291 | cds-NP_009793.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:672916-674070:- | gene-YBR234C_MUCL30387 | rna-NM_001178582.1_MUCL30387 | cds-NP_009793.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:689995-691149:- | gene-YBR234C_MUCL30388 | rna-NM_001178582.1_MUCL30388 | cds-NP_009793.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:659629-660783:- | gene-YBR234C_MUCL39482 | rna-NM_001178582.1_MUCL39482 | cds-NP_009793.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:669478-670632:- | gene-YBR234C_MUCL42920 | rna-NM_001178582.1_MUCL42920 | cds-NP_009793.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:685235-686389:- | gene-YBR234C_NCIM3186 | rna-NM_001178582.1_NCIM3186 | cds-NP_009793.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:661492-662646:- | gene-YBR234C_NCYC1407 | rna-NM_001178582.1_NCYC1407 | cds-NP_009793.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:684608-685762:- | gene-YBR234C_PE2H3 | rna-NM_001178582.1_PE2H3 | cds-NP_009793.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:682284-683438:- | gene-YBR234C_PE2H4 | rna-NM_001178582.1_PE2H4 | cds-NP_009793.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:685438-686592:- | gene-YBR234C_S288C | rna-NM_001178582.1_S288C | cds-NP_009793.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:40565-41719:- | gene-YBR234C_SA1 | rna-NM_001178582.1_SA1 | cds-NP_009793.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:685103-686257:- | gene-YBR234C_ThermosaccDry | rna-NM_001178582.1_ThermosaccDry | cds-NP_009793.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:665281-666435:- | gene-YBR234C_VR1 | rna-NM_001178582.1_VR1 | cds-NP_009793.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:657966-659120:- | gene-YBR234C_ZTW1 | rna-NM_001178582.1_ZTW1 | cds-NP_009793.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:701967-703121:- | gene-YBR234C_Sparadoxus | rna-NM_001178582.1_Sparadoxus | cds-NP_009793.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |