Gene name: ARB1
Reference locus (S288C): YER036C
Gene biotype: protein_coding
Description: ABC transporter ATP-binding protein ARB1; ATPase of the ATP-binding cassette (ABC) family; involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p; human homolog ABCF2 can complement yeast ARB1 mutant; Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily
Top 10 interactors (score): RLI1 (0.998); CAM1 (0.994); RPL35B (0.988); TIF6 (0.987); RPL3 (0.986); RPL28 (0.986); RPL25 (0.985); RPL1B (0.985); TEF4 (0.985); RPL17A (0.984); RPL2A (0.983); RPL12B (0.983); RPL35A (0.982); RPL2B (0.982); RPL34A (0.981); ARX1 (0.981); RPL19B (0.98); RPL37A (0.98); NEW1 (0.978); FUN12 (0.971)
Homologues (species, bitscore): ABCF2 (Homo sapiens, 588.2); Abcf2 (Mus musculus, 585.5); abcf2a (Danio rerio, 590.5); abcf3 (Xenopus tropicalis, 410.2); CG9281 (Drosophila melanogaster, 565.1); abcf-2 (Caenorhabditis elegans, 542.7); ABCF1 (Arabidopsis thaliana, 626.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:217401-219233:- | gene-YER036C_AKU4011 | rna-NM_001178927.1_AKU4011 | cds-NP_010953.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:206495-208327:+ | gene-YER036C_BG1 | rna-NM_001178927.1_BG1 | cds-NP_010953.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:226285-228117:- | gene-YER036C_Bruggeman | rna-NM_001178927.1_Bruggeman | cds-NP_010953.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:220419-222251:- | gene-YER036C_CAT1 | rna-NM_001178927.1_CAT1 | cds-NP_010953.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:217326-219158:- | gene-YER036C_CBS1585 | rna-NM_001178927.1_CBS1585 | cds-NP_010953.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:219269-221101:- | gene-YER036C_CBS436 | rna-NM_001178927.1_CBS436 | cds-NP_010953.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:217568-219400:- | gene-YER036C_CBS6412 | rna-NM_001178927.1_CBS6412 | cds-NP_010953.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:222812-224644:- | gene-YER036C_CBS6413 | rna-NM_001178927.1_CBS6413 | cds-NP_010953.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:221308-223140:- | gene-YER036C_CENPK1137D | rna-NM_001178927.1_CENPK1137D | cds-NP_010953.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:218030-219862:- | gene-YER036C_EthanolRed | rna-NM_001178927.1_EthanolRed | cds-NP_010953.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:218294-220126:- | gene-YER036C_FaliES1 | rna-NM_001178927.1_FaliES1 | cds-NP_010953.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:16067-17898:- | gene-YER036C_JAY291 | rna-NM_001178927.1_JAY291 | cds-NP_010953.1_JAY291 | 99.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:221732-223564:- | gene-YER036C_MUCL30387 | rna-NM_001178927.1_MUCL30387 | cds-NP_010953.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:217949-219781:- | gene-YER036C_MUCL30388 | rna-NM_001178927.1_MUCL30388 | cds-NP_010953.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:216368-218200:- | gene-YER036C_MUCL39482 | rna-NM_001178927.1_MUCL39482 | cds-NP_010953.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:223458-225290:- | gene-YER036C_MUCL42920 | rna-NM_001178927.1_MUCL42920 | cds-NP_010953.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:223366-225198:- | gene-YER036C_NCIM3186 | rna-NM_001178927.1_NCIM3186 | cds-NP_010953.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:221437-223269:- | gene-YER036C_NCYC1407 | rna-NM_001178927.1_NCYC1407 | cds-NP_010953.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:232076-233908:- | gene-YER036C_PE2H3 | rna-NM_001178927.1_PE2H3 | cds-NP_010953.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:222017-223849:- | gene-YER036C_PE2H4 | rna-NM_001178927.1_PE2H4 | cds-NP_010953.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:223367-225199:- | gene-YER036C_S288C | rna-NM_001178927.1_S288C | cds-NP_010953.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:18480-20312:+ | gene-YER036C_SA1 | rna-NM_001178927.1_SA1 | cds-NP_010953.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:219065-220897:- | gene-YER036C_ThermosaccDry | rna-NM_001178927.1_ThermosaccDry | cds-NP_010953.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:218172-220004:- | gene-YER036C_VR1 | rna-NM_001178927.1_VR1 | cds-NP_010953.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:216276-218108:- | gene-YER036C_ZTW1 | rna-NM_001178927.1_ZTW1 | cds-NP_010953.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:220129-221961:- | gene-YER036C_Sparadoxus | rna-NM_001178927.1_Sparadoxus | cds-NP_010953.1_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |