Gene name: APS3
Reference locus (S288C): YJL024C
Gene biotype: protein_coding
Description: AP-3 complex subunit sigma; Small subunit of the clathrin-associated adaptor complex AP-3; involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): APL5 (0.999); APL6 (0.999); APM3 (0.996); APL4 (0.968); APM4 (0.945); APM1 (0.916); APM2 (0.89); APL3 (0.834); APL2 (0.81); APL1 (0.81); APS1 (0.8); APS2 (0.782); SFT2 (0.742); VMA21 (0.683); VPS21 (0.682); VMA5 (0.68); VPS45 (0.668); COP1 (0.666); CKS1 (0.655); VPH2 (0.65)
Homologues (species, bitscore): AP3S1 (Homo sapiens, 141.4); Ap3s1 (Mus musculus, 141.4); ap3s2 (Danio rerio, 136.7); ap3s1 (Xenopus tropicalis, 136.3); or (Drosophila melanogaster, 137.9); aps-3 (Caenorhabditis elegans, 133.7); AT3G50860 (Arabidopsis thaliana, 124.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:378887-379548:- | gene-YJL024C_AKU4011 | rna-NM_001181458.3_AKU4011 | cds-NP_012510.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:234563-235224:+ | gene-YJL024C_BG1 | rna-NM_001181458.3_BG1 | cds-NP_012510.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:393088-393749:- | gene-YJL024C_Bruggeman | rna-NM_001181458.3_Bruggeman | cds-NP_012510.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:397039-397700:- | gene-YJL024C_CAT1 | rna-NM_001181458.3_CAT1 | cds-NP_012510.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:390560-391221:- | gene-YJL024C_CBS1585 | rna-NM_001181458.3_CBS1585 | cds-NP_012510.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:408911-409572:- | gene-YJL024C_CBS436 | rna-NM_001181458.3_CBS436 | cds-NP_012510.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:379149-379810:- | gene-YJL024C_CBS6412 | rna-NM_001181458.3_CBS6412 | cds-NP_012510.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:381030-381691:- | gene-YJL024C_CBS6413 | rna-NM_001181458.3_CBS6413 | cds-NP_012510.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:378352-379013:- | gene-YJL024C_CENPK1137D | rna-NM_001181458.3_CENPK1137D | cds-NP_012510.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:382105-382766:- | gene-YJL024C_EthanolRed | rna-NM_001181458.3_EthanolRed | cds-NP_012510.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:394553-395214:- | gene-YJL024C_FaliES1 | rna-NM_001181458.3_FaliES1 | cds-NP_012510.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:20217-20878:+ | gene-YJL024C_JAY291 | rna-NM_001181458.3_JAY291 | cds-NP_012510.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:393332-393993:- | gene-YJL024C_MUCL30387 | rna-NM_001181458.3_MUCL30387 | cds-NP_012510.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:389474-390135:- | gene-YJL024C_MUCL30388 | rna-NM_001181458.3_MUCL30388 | cds-NP_012510.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:383877-384538:- | gene-YJL024C_MUCL39482 | rna-NM_001181458.3_MUCL39482 | cds-NP_012510.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:389219-389880:- | gene-YJL024C_MUCL42920 | rna-NM_001181458.3_MUCL42920 | cds-NP_012510.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:395910-396571:- | gene-YJL024C_NCIM3186 | rna-NM_001181458.3_NCIM3186 | cds-NP_012510.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:381825-382486:- | gene-YJL024C_NCYC1407 | rna-NM_001181458.3_NCYC1407 | cds-NP_012510.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:393900-394561:- | gene-YJL024C_PE2H3 | rna-NM_001181458.3_PE2H3 | cds-NP_012510.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:393546-394207:- | gene-YJL024C_PE2H4 | rna-NM_001181458.3_PE2H4 | cds-NP_012510.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:395931-396592:- | gene-YJL024C_S288C | rna-NM_001181458.3_S288C | cds-NP_012510.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:191466-192127:- | gene-YJL024C_SA1 | rna-NM_001181458.3_SA1 | cds-NP_012510.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:388212-388873:- | gene-YJL024C_ThermosaccDry | rna-NM_001181458.3_ThermosaccDry | cds-NP_012510.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:390058-390719:- | gene-YJL024C_VR1 | rna-NM_001181458.3_VR1 | cds-NP_012510.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:368882-369543:- | gene-YJL024C_ZTW1 | rna-NM_001181458.3_ZTW1 | cds-NP_012510.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:394129-394788:- | gene-YJL024C_Sparadoxus | rna-NM_001181458.3_Sparadoxus | cds-NP_012510.3_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |