Gene name: APS2
Reference locus (S288C): YJR058C
Gene biotype: protein_coding
Description: AP-2 complex subunit sigma; Small subunit of the clathrin-associated adaptor complex AP-2; AP-2 is involved in protein sorting at the plasma membrane; related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex
Top 10 interactors (score): APM4 (0.999); APL3 (0.999); APL1 (0.999); APL2 (0.997); CHC1 (0.995); CLC1 (0.98); EDE1 (0.964); APM3 (0.961); APM1 (0.937); APL5 (0.928); APL4 (0.923); ENT5 (0.917); ENT3 (0.917); HOF1 (0.913); APM2 (0.901); YAP1801 (0.901); PAN1 (0.895); PRK1 (0.879); SYP1 (0.879); END3 (0.879)
Homologues (species, bitscore): AP2S1 (Homo sapiens, 136.3); Ap2s1 (Mus musculus, 136.3); ap2s1 (Danio rerio, 137.5); ap2s1 (Xenopus tropicalis, 137.5); AP-2sigma (Drosophila melanogaster, 136.0); aps-2 (Caenorhabditis elegans, 137.1); AT1G47830 (Arabidopsis thaliana, 139.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:516263-516706:- | gene-YJR058C_AKU4011 | rna-NM_001181716.1_AKU4011 | cds-NP_012592.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:90917-91360:+ | gene-YJR058C_BG1 | rna-NM_001181716.1_BG1 | cds-NP_012592.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:529769-530212:- | gene-YJR058C_Bruggeman | rna-NM_001181716.1_Bruggeman | cds-NP_012592.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:534082-534525:- | gene-YJR058C_CAT1 | rna-NM_001181716.1_CAT1 | cds-NP_012592.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:528327-528770:- | gene-YJR058C_CBS1585 | rna-NM_001181716.1_CBS1585 | cds-NP_012592.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:546396-546839:- | gene-YJR058C_CBS436 | rna-NM_001181716.1_CBS436 | cds-NP_012592.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:515476-515919:- | gene-YJR058C_CBS6412 | rna-NM_001181716.1_CBS6412 | cds-NP_012592.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:517772-518215:- | gene-YJR058C_CBS6413 | rna-NM_001181716.1_CBS6413 | cds-NP_012592.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:527090-527533:- | gene-YJR058C_CENPK1137D | rna-NM_001181716.1_CENPK1137D | cds-NP_012592.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:520656-521099:- | gene-YJR058C_EthanolRed | rna-NM_001181716.1_EthanolRed | cds-NP_012592.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:532122-532565:- | gene-YJR058C_FaliES1 | rna-NM_001181716.1_FaliES1 | cds-NP_012592.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:156824-157267:+ | gene-YJR058C_JAY291 | rna-NM_001181716.1_JAY291 | cds-NP_012592.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:530307-530750:- | gene-YJR058C_MUCL30387 | rna-NM_001181716.1_MUCL30387 | cds-NP_012592.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:527581-528024:- | gene-YJR058C_MUCL30388 | rna-NM_001181716.1_MUCL30388 | cds-NP_012592.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:521789-522232:- | gene-YJR058C_MUCL39482 | rna-NM_001181716.1_MUCL39482 | cds-NP_012592.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:526016-526459:- | gene-YJR058C_MUCL42920 | rna-NM_001181716.1_MUCL42920 | cds-NP_012592.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:544711-545154:- | gene-YJR058C_NCIM3186 | rna-NM_001181716.1_NCIM3186 | cds-NP_012592.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:519353-519796:- | gene-YJR058C_NCYC1407 | rna-NM_001181716.1_NCYC1407 | cds-NP_012592.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:537245-537688:- | gene-YJR058C_PE2H3 | rna-NM_001181716.1_PE2H3 | cds-NP_012592.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:530941-531384:- | gene-YJR058C_PE2H4 | rna-NM_001181716.1_PE2H4 | cds-NP_012592.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:544732-545175:- | gene-YJR058C_S288C | rna-NM_001181716.1_S288C | cds-NP_012592.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:3311-3754:- | gene-YJR058C_SA1 | rna-NM_001181716.1_SA1 | cds-NP_012592.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:526052-526495:- | gene-YJR058C_ThermosaccDry | rna-NM_001181716.1_ThermosaccDry | cds-NP_012592.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:527931-528374:- | gene-YJR058C_VR1 | rna-NM_001181716.1_VR1 | cds-NP_012592.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:505441-505884:- | gene-YJR058C_ZTW1 | rna-NM_001181716.1_ZTW1 | cds-NP_012592.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:538855-539298:- | gene-YJR058C_Sparadoxus | rna-NM_001181716.1_Sparadoxus | cds-NP_012592.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |