Gene name: APS1
Reference locus (S288C): YLR170C
Gene biotype: protein_coding
Description: Small subunit of the clathrin-associated adaptor complex AP-1; AP-1 is involved in protein sorting at the trans-Golgi network; homolog of the sigma subunit of the mammalian clathrin AP-1 complex
Top 10 interactors (score): APL2 (0.999); APM1 (0.999); APL4 (0.999); APM2 (0.986); CHC1 (0.973); LAA1 (0.962); APM4 (0.956); APL1 (0.951); APM3 (0.916); ENT5 (0.905); CLC1 (0.879); APL5 (0.852); APL6 (0.849); APL3 (0.838); APS3 (0.8); APS2 (0.768); SWA2 (0.752); ENT3 (0.724); SEC26 (0.679); MIL1 (0.658)
Homologues (species, bitscore): AP1S2 (Homo sapiens, 172.9); Ap1s2 (Mus musculus, 172.2); ap1s1 (Danio rerio, 174.5); ap1s2 (Xenopus tropicalis, 171.8); AP-1sigma (Drosophila melanogaster, 168.3); aps-1 (Caenorhabditis elegans, 174.5); AP19 (Arabidopsis thaliana, 157.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:454682-455152:- | gene-YLR170C_AKU4011 | rna-NM_001182057.1_AKU4011 | cds-NP_013271.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:11910-12380:- | gene-YLR170C_BG1 | rna-NM_001182057.1_BG1 | cds-NP_013271.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:495023-495493:- | gene-YLR170C_Bruggeman | rna-NM_001182057.1_Bruggeman | cds-NP_013271.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:494553-495023:- | gene-YLR170C_CAT1 | rna-NM_001182057.1_CAT1 | cds-NP_013271.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:490179-490649:- | gene-YLR170C_CBS1585 | rna-NM_001182057.1_CBS1585 | cds-NP_013271.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:480319-480789:- | gene-YLR170C_CBS436 | rna-NM_001182057.1_CBS436 | cds-NP_013271.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:458750-459220:- | gene-YLR170C_CBS6412 | rna-NM_001182057.1_CBS6412 | cds-NP_013271.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:490485-490955:- | gene-YLR170C_CBS6413 | rna-NM_001182057.1_CBS6413 | cds-NP_013271.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:485296-485766:- | gene-YLR170C_CENPK1137D | rna-NM_001182057.1_CENPK1137D | cds-NP_013271.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:454203-454673:- | gene-YLR170C_EthanolRed | rna-NM_001182057.1_EthanolRed | cds-NP_013271.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:483130-483600:- | gene-YLR170C_FaliES1 | rna-NM_001182057.1_FaliES1 | cds-NP_013271.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:10063-10533:- | gene-YLR170C_JAY291 | rna-NM_001182057.1_JAY291 | cds-NP_013271.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:495044-495514:- | gene-YLR170C_MUCL30387 | rna-NM_001182057.1_MUCL30387 | cds-NP_013271.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:499976-500446:- | gene-YLR170C_MUCL30388 | rna-NM_001182057.1_MUCL30388 | cds-NP_013271.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:491176-491646:- | gene-YLR170C_MUCL39482 | rna-NM_001182057.1_MUCL39482 | cds-NP_013271.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:491748-492218:- | gene-YLR170C_MUCL42920 | rna-NM_001182057.1_MUCL42920 | cds-NP_013271.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:500553-501023:- | gene-YLR170C_NCIM3186 | rna-NM_001182057.1_NCIM3186 | cds-NP_013271.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:483600-484070:- | gene-YLR170C_NCYC1407 | rna-NM_001182057.1_NCYC1407 | cds-NP_013271.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:487850-488320:- | gene-YLR170C_PE2H3 | rna-NM_001182057.1_PE2H3 | cds-NP_013271.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:487594-488064:- | gene-YLR170C_PE2H4 | rna-NM_001182057.1_PE2H4 | cds-NP_013271.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:500579-501049:- | gene-YLR170C_S288C | rna-NM_001182057.1_S288C | cds-NP_013271.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:10121-10591:- | gene-YLR170C_SA1 | rna-NM_001182057.1_SA1 | cds-NP_013271.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:485654-486124:- | gene-YLR170C_ThermosaccDry | rna-NM_001182057.1_ThermosaccDry | cds-NP_013271.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:496963-497433:- | gene-YLR170C_VR1 | rna-NM_001182057.1_VR1 | cds-NP_013271.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:10023-10493:- | gene-YLR170C_ZTW1 | rna-NM_001182057.1_ZTW1 | cds-NP_013271.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:471683-472153:- | gene-YLR170C_Sparadoxus | rna-NM_001182057.1_Sparadoxus | cds-NP_013271.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |