APQ13 (YJL075C)


Gene profile

Gene name: APQ13
Reference locus (S288C): YJL075C
Gene biotype: protein_coding

Description: Putative uncharacterized protein APQ13; Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 85% of ORF overlaps the verified gene NET1; null mutant is sensitive to sorbate

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005304.1:281327-281743:- gene-YJL075C_AKU4011 rna-NM_001395035.1_AKU4011 cds-NP_001381965.1_AKU4011 99.5 100.0 Mismatch 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000190.1:332770-333187:+ gene-YJL075C_BG1 rna-NM_001395035.1_BG1 cds-NP_001381965.1_BG1 99.5 100.0 Mismatch 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005512.1:293866-294282:- gene-YJL075C_Bruggeman rna-NM_001395035.1_Bruggeman cds-NP_001381965.1_Bruggeman 99.2 100.0 Mismatch 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005528.1:297966-298382:- gene-YJL075C_CAT1 rna-NM_001395035.1_CAT1 cds-NP_001381965.1_CAT1 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005368.1:292985-293401:- gene-YJL075C_CBS1585 rna-NM_001395035.1_CBS1585 cds-NP_001381965.1_CBS1585 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005352.1:310992-311408:- gene-YJL075C_CBS436 rna-NM_001395035.1_CBS436 cds-NP_001381965.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005336.1:282085-282501:- gene-YJL075C_CBS6412 rna-NM_001395035.1_CBS6412 cds-NP_001381965.1_CBS6412 99.2 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005320.1:283441-283857:- gene-YJL075C_CBS6413 rna-NM_001395035.1_CBS6413 cds-NP_001381965.1_CBS6413 99.5 100.0 Mismatch 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001531.1:280930-281346:- gene-YJL075C_CENPK1137D rna-NM_001395035.1_CENPK1137D cds-NP_001381965.1_CENPK1137D 100.0 100.0 Mismatch 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005480.1:285165-285581:- gene-YJL075C_EthanolRed rna-NM_001395035.1_EthanolRed cds-NP_001381965.1_EthanolRed 99.2 100.0 Mismatch 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005544.1:296740-297156:- gene-YJL075C_FaliES1 rna-NM_001395035.1_FaliES1 cds-NP_001381965.1_FaliES1 99.5 100.0 Mismatch 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000138.1:94322-94739:- gene-YJL075C_JAY291 rna-NM_001395035.1_JAY291 cds-NP_001381965.1_JAY291 99.5 100.0 Mismatch 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005416.1:295023-295439:- gene-YJL075C_MUCL30387 rna-NM_001395035.1_MUCL30387 cds-NP_001381965.1_MUCL30387 99.5 100.0 Mismatch 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005448.1:291059-291475:- gene-YJL075C_MUCL30388 rna-NM_001395035.1_MUCL30388 cds-NP_001381965.1_MUCL30388 99.2 100.0 Mismatch 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005288.1:285737-286153:- gene-YJL075C_MUCL39482 rna-NM_001395035.1_MUCL39482 cds-NP_001381965.1_MUCL39482 99.5 100.0 Mismatch 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:292387-292803:- gene-YJL075C_MUCL42920 rna-NM_001395035.1_MUCL42920 cds-NP_001381965.1_MUCL42920 99.5 100.0 Mismatch 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011819.1:298439-298855:- gene-YJL075C_NCIM3186 rna-NM_001395035.1_NCIM3186 cds-NP_001381965.1_NCIM3186 99.5 100.0 Mismatch 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005272.1:284433-284849:- gene-YJL075C_NCYC1407 rna-NM_001395035.1_NCYC1407 cds-NP_001381965.1_NCYC1407 99.5 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994149.1:296787-297203:- gene-YJL075C_PE2H3 rna-NM_001395035.1_PE2H3 cds-NP_001381965.1_PE2H3 100.0 100.0 Mismatch 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999881.1:296431-296847:- gene-YJL075C_PE2H4 rna-NM_001395035.1_PE2H4 cds-NP_001381965.1_PE2H4 100.0 100.0 Mismatch 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001142.9:298460-298876:- gene-YJL075C_S288C rna-NM_001395035.1_S288C cds-NP_001381965.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000003.1:94349-94765:- gene-YJL075C_SA1 rna-NM_001395035.1_SA1 cds-NP_001381965.1_SA1 99.5 100.0 Mismatch 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005496.1:290153-290569:- gene-YJL075C_ThermosaccDry rna-NM_001395035.1_ThermosaccDry cds-NP_001381965.1_ThermosaccDry 99.5 100.0 Mismatch 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005464.1:292329-292746:- gene-YJL075C_VR1 rna-NM_001395035.1_VR1 cds-NP_001381965.1_VR1 99.5 100.0 Mismatch 1 1 0 False False False True False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000021.1:271539-271955:- gene-YJL075C_ZTW1 rna-NM_001395035.1_ZTW1 cds-NP_001381965.1_ZTW1 99.0 100.0 Mismatch 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047496.1:295531-295950:- gene-YJL075C_Sparadoxus rna-NM_001395035.1_Sparadoxus cds-NP_001381965.1_Sparadoxus 89.2 100.0 Unannotated 1 1 0 False False False False True

Additional files