Gene name: APN2
Reference locus (S288C): YBL019W
Gene biotype: protein_coding
Description: DNA-(apurinic or apyrimidinic site) lyase 2; Class II abasic (AP) endonuclease involved in repair of DNA damage; homolog of human HAP1 and E. coli exoIII
Top 10 interactors (score): APN1 (0.999); UNG1 (0.993); NTG2 (0.989); TDP1 (0.988); RAD1 (0.984); NTG1 (0.983); OGG1 (0.978); RAD27 (0.976); COX13 (0.973); TPP1 (0.971); PCM1 (0.968); MRPL8 (0.964); DUT1 (0.963); APE2 (0.951); RAD10 (0.945); RAD14 (0.936); CDC9 (0.931); MAG1 (0.914); POL30 (0.896); RAD51 (0.891)
Homologues (species, bitscore): APEX2 (Homo sapiens, 158.3); Apex2 (Mus musculus, 160.2); apex2 (Danio rerio, 151.8); apex2 (Xenopus tropicalis, 139.0); Rrp1 (Drosophila melanogaster, 61.6); exo-3 (Caenorhabditis elegans, 67.4); AT4G36050 (Arabidopsis thaliana, 109.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:177964-179526:+ | gene-YBL019W_AKU4011 | rna-NM_001178259.1_AKU4011 | cds-NP_009534.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:168790-170352:+ | gene-YBL019W_BG1 | rna-NM_001178259.1_BG1 | cds-NP_009534.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:178550-180112:+ | gene-YBL019W_Bruggeman | rna-NM_001178259.1_Bruggeman | cds-NP_009534.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:181159-182721:+ | gene-YBL019W_CAT1 | rna-NM_001178259.1_CAT1 | cds-NP_009534.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:170519-172081:+ | gene-YBL019W_CBS1585 | rna-NM_001178259.1_CBS1585 | cds-NP_009534.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:178972-180534:+ | gene-YBL019W_CBS436 | rna-NM_001178259.1_CBS436 | cds-NP_009534.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:269298-270860:+ | gene-YBL019W_CBS6412 | rna-NM_001178259.1_CBS6412 | cds-NP_009534.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:176089-177651:+ | gene-YBL019W_CBS6413 | rna-NM_001178259.1_CBS6413 | cds-NP_009534.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:178118-179680:+ | gene-YBL019W_CENPK1137D | rna-NM_001178259.1_CENPK1137D | cds-NP_009534.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:305506-307068:+ | gene-YBL019W_EthanolRed | rna-NM_001178259.1_EthanolRed | cds-NP_009534.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:192772-194334:+ | gene-YBL019W_FaliES1 | rna-NM_001178259.1_FaliES1 | cds-NP_009534.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:18441-20003:+ | gene-YBL019W_JAY291 | rna-NM_001178259.1_JAY291 | cds-NP_009534.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:178407-179969:+ | gene-YBL019W_MUCL30387 | rna-NM_001178259.1_MUCL30387 | cds-NP_009534.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:179449-181011:+ | gene-YBL019W_MUCL30388 | rna-NM_001178259.1_MUCL30388 | cds-NP_009534.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:170704-172266:+ | gene-YBL019W_MUCL39482 | rna-NM_001178259.1_MUCL39482 | cds-NP_009534.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:177979-179541:+ | gene-YBL019W_MUCL42920 | rna-NM_001178259.1_MUCL42920 | cds-NP_009534.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:184150-185712:+ | gene-YBL019W_NCIM3186 | rna-NM_001178259.1_NCIM3186 | cds-NP_009534.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:171853-173415:+ | gene-YBL019W_NCYC1407 | rna-NM_001178259.1_NCYC1407 | cds-NP_009534.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:178078-179640:+ | gene-YBL019W_PE2H3 | rna-NM_001178259.1_PE2H3 | cds-NP_009534.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:175722-177284:+ | gene-YBL019W_PE2H4 | rna-NM_001178259.1_PE2H4 | cds-NP_009534.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:184353-185915:+ | gene-YBL019W_S288C | rna-NM_001178259.1_S288C | cds-NP_009534.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:69073-70635:+ | gene-YBL019W_SA1 | rna-NM_001178259.1_SA1 | cds-NP_009534.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:192727-194289:+ | gene-YBL019W_ThermosaccDry | rna-NM_001178259.1_ThermosaccDry | cds-NP_009534.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:174891-176453:+ | gene-YBL019W_VR1 | rna-NM_001178259.1_VR1 | cds-NP_009534.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:169438-171000:+ | gene-YBL019W_ZTW1 | rna-NM_001178259.1_ZTW1 | cds-NP_009534.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:204375-205937:+ | gene-YBL019W_Sparadoxus | rna-NM_001178259.1_Sparadoxus | cds-NP_009534.1_Sparadoxus | 89.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |