Gene name: APM3
Reference locus (S288C): YBR288C
Gene biotype: protein_coding
Description: Mu3-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway
Top 10 interactors (score): APL6 (0.999); APL5 (0.999); APS3 (0.996); APS2 (0.961); APL1 (0.936); APL4 (0.932); APM1 (0.931); APM4 (0.929); APS1 (0.916); APM2 (0.907); APL3 (0.869); APL2 (0.822); PEP12 (0.727); SRP102 (0.706); VPS33 (0.697); ROK1 (0.694); CHC1 (0.68); STV1 (0.676); YBR071W (0.674); YBL012C (0.674)
Homologues (species, bitscore): AP3M2 (Homo sapiens, 68.2); Ap3m2 (Mus musculus, 67.8); ap3m2 (Danio rerio, 72.8); ap3m2 (Xenopus tropicalis, 64.7); cm (Drosophila melanogaster, 60.8); apm-3 (Caenorhabditis elegans, 71.2); AP3M (Arabidopsis thaliana, 64.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:762311-763762:- | gene-YBR288C_AKU4011 | rna-NM_001178636.4_AKU4011 | cds-NP_009847.4_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:133305-134756:- | gene-YBR288C_BG1 | rna-NM_001178636.4_BG1 | cds-NP_009847.4_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:763444-764895:- | gene-YBR288C_Bruggeman | rna-NM_001178636.4_Bruggeman | cds-NP_009847.4_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:767171-768622:- | gene-YBR288C_CAT1 | rna-NM_001178636.4_CAT1 | cds-NP_009847.4_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:753877-755328:- | gene-YBR288C_CBS1585 | rna-NM_001178636.4_CBS1585 | cds-NP_009847.4_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:760294-761745:- | gene-YBR288C_CBS436 | rna-NM_001178636.4_CBS436 | cds-NP_009847.4_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:848491-849942:- | gene-YBR288C_CBS6412 | rna-NM_001178636.4_CBS6412 | cds-NP_009847.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:759926-761377:- | gene-YBR288C_CBS6413 | rna-NM_001178636.4_CBS6413 | cds-NP_009847.4_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:771911-773362:- | gene-YBR288C_CENPK1137D | rna-NM_001178636.4_CENPK1137D | cds-NP_009847.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:885350-886801:- | gene-YBR288C_EthanolRed | rna-NM_001178636.4_EthanolRed | cds-NP_009847.4_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:778697-780148:- | gene-YBR288C_FaliES1 | rna-NM_001178636.4_FaliES1 | cds-NP_009847.4_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:23945-25396:+ | gene-YBR288C_JAY291 | rna-NM_001178636.4_JAY291 | cds-NP_009847.4_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:765484-766935:- | gene-YBR288C_MUCL30387 | rna-NM_001178636.4_MUCL30387 | cds-NP_009847.4_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:782565-784016:- | gene-YBR288C_MUCL30388 | rna-NM_001178636.4_MUCL30388 | cds-NP_009847.4_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:752184-753635:- | gene-YBR288C_MUCL39482 | rna-NM_001178636.4_MUCL39482 | cds-NP_009847.4_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:762030-763481:- | gene-YBR288C_MUCL42920 | rna-NM_001178636.4_MUCL42920 | cds-NP_009847.4_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:777809-779260:- | gene-YBR288C_NCIM3186 | rna-NM_001178636.4_NCIM3186 | cds-NP_009847.4_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:754073-755524:- | gene-YBR288C_NCYC1407 | rna-NM_001178636.4_NCYC1407 | cds-NP_009847.4_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:777171-778622:- | gene-YBR288C_PE2H3 | rna-NM_001178636.4_PE2H3 | cds-NP_009847.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:774847-776298:- | gene-YBR288C_PE2H4 | rna-NM_001178636.4_PE2H4 | cds-NP_009847.4_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:778012-779463:- | gene-YBR288C_S288C | rna-NM_001178636.4_S288C | cds-NP_009847.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:133127-134578:- | gene-YBR288C_SA1 | rna-NM_001178636.4_SA1 | cds-NP_009847.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:777689-779140:- | gene-YBR288C_ThermosaccDry | rna-NM_001178636.4_ThermosaccDry | cds-NP_009847.4_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:757871-759322:- | gene-YBR288C_VR1 | rna-NM_001178636.4_VR1 | cds-NP_009847.4_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:750525-751976:- | gene-YBR288C_ZTW1 | rna-NM_001178636.4_ZTW1 | cds-NP_009847.4_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:794392-795843:- | gene-YBR288C_Sparadoxus | rna-NM_001178636.4_Sparadoxus | cds-NP_009847.4_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |